MirGeneDB 3.0

MirGeneDB ID

Spt-Mir-193-P2a

Family name MIR-193 (all species)
Species Tuatara (Sphenodon punctatus)
MiRBase ID
Paralogues Spt-Mir-193-P1a  Spt-Mir-193-P1b  Spt-Mir-193-P2b 
Orthologues Ami-Mir-193-P2a  Bge-Mir-193-P2  Bta-Mir-193-P2a  Cbr-Mir-193-P2-v1  Cel-Mir-193-P2-v1  Cfa-Mir-193-P2a  Cja-Mir-193-P2a  Cli-Mir-193-P2a  Cmi-Mir-193-P2a  Cpi-Mir-193-P2a  Cpo-Mir-193-P2a  Cte-Mir-193-P2  Dgr-Mir-193-P2  Dlo-Mir-193-P2  Dno-Mir-193-P2a  Dre-Mir-193-P2a  Ebu-Mir-193-P2  Eca-Mir-193-P2a  Ete-Mir-193-P2a  Gga-Mir-193-P2a  Hme-Mir-193-P2  Hru-Mir-193-P2  Hsa-Mir-193-P2a  Laf-Mir-193-P2a  Lch-Mir-193-P2a  Lgi-Mir-193-P2  Llo-Mir-193-P2-v1  Loc-Mir-193-P2a  Mdo-Mir-193-P2a  Mgi-Mir-193-P2  Mml-Mir-193-P2a  Mmr-Mir-193-P2a  Mmu-Mir-193-P2a  Mun-Mir-193-P2a  Neu-Mir-193-P2a  Oan-Mir-193-P2a  Ocu-Mir-193-P2a  Pab-Mir-193-P2a  Pau-Mir-193-P2  Pbv-Mir-193-P2a  Pdu-Mir-193-P2  Pfl-Mir-193-P2  Pma-Mir-193-P2  Pmi-Mir-193-P2  Pve-Mir-193-P2  Rno-Mir-193-P2a  Rph-Mir-193-P2  Sha-Mir-193-P2a  Sko-Mir-193-P2  Snu-Mir-193-P2  Spu-Mir-193-P2  Sro-Mir-193-P2  Sto-Mir-193-P2a  Tca-Mir-193-P2  Tgu-Mir-193-P2a  Xbo-Mir-193-P2  Xla-Mir-193-P2a3  Xla-Mir-193-P2a4  Xtr-Mir-193-P2a 
Node of Origin (locus) Vertebrata
Node of Origin (family) Bilateria
Genome context
(GCA_003113815.1_ASM311381v1_TUATARA)
QEPC01007559.1: 13494940-13495000 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-193-P2a)
Mir-193-P1a QEPC01007559.1: 13485014-13485072 [+] UCSC Ensembl
Mir-193-P2a QEPC01007559.1: 13494940-13495000 [+] UCSC Ensembl
Seed AAUGCCC
Precursor
(pre-Mir +30nt flank)
CCUGCAUGGCUCAUUACCGCAGGGAAAAUGAGGGGCUUUUGGGGGCAGAUGUGUUUAAAUUACACUAUCAUAAUGCCCCUAAAAAUCCUUAUUACUCUUGCAGUAUUCUUCUGUGUUGCUG
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Structure
        10          20        30        40        50        60 
CCUGCAUGGCUCAUUACC--|     AA        GC           GA    UUUAAAU 
                    GCAGGG  AAUGAGGG  UUUUGGGGGCA  UGUG       \
                    CGUUCU  UUAUUCCU  AAAAUCCCCGU  AUAC       U
GUCGUUGUGUCUUCUUAUGA^     CA        A-           A-    UAUCACA 
 .       110       100        90         80         70
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Star sequence

Spt-Mir-193-P2a_5p* (predicted)

mirBase accessionNone
Sequence
0- AGGGGCUUUUGGGGGCAGAUGUG -23
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Mature sequence

Spt-Mir-193-P2a_3p (predicted)

mirBase accessionNone
Sequence
40- UAAUGCCCCUAAAAAUCCUUA -61
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