Mir-193-P1a

MirGeneDB ID

Cmi-Mir-193-P1a

Family name

MIR-193 (all species)

Species

Australian ghostshark (Callorhinchus milii)

MiRBase ID

Paralogues

Cmi-Mir-193-P1b Cmi-Mir-193-P2a Cmi-Mir-193-P2b

Orthologues

Aae-Mir-193-P1 Aga-Mir-193-P1 Ami-Mir-193-P1a Bge-Mir-193-P1 Bta-Mir-193-P1a Cbr-Mir-193-P1-v1 Cel-Mir-193-P1-v1 Cfa-Mir-193-P1a Cja-Mir-193-P1a Cli-Mir-193-P1a Cpi-Mir-193-P1a Cpo-Mir-193-P1a Cte-Mir-193-P1 Dan-Mir-193-P1-v1 Dgr-Mir-193-P1 Dlo-Mir-193-P1 Dma-Mir-193-P1 Dme-Mir-193-P1-v1 Dmo-Mir-193-P1-v1 Dno-Mir-193-P1a Dpu-Mir-193-P1 Dre-Mir-193-P1a Dsi-Mir-193-P1-v1 Dya-Mir-193-P1-v1 Eba-Mir-193-P1 Eca-Mir-193-P1a Esc-Mir-193-P1 Ete-Mir-193-P1a Gga-Mir-193-P1a Gpa-Mir-193-P1 Hme-Mir-193-P1 Hru-Mir-193-P1 Hsa-Mir-193-P1a Isc-Mir-193-P1 Laf-Mir-193-P1a Lch-Mir-193-P1a Lgi-Mir-193-P1 Lhy-Mir-193-P1 Loc-Mir-193-P1a Mdo-Mir-193-P1a Mgi-Mir-193-P1 Mml-Mir-193-P1a Mmr-Mir-193-P1a Mmu-Mir-193-P1a Mom-Mir-193-P1 Mun-Mir-193-P1a Npo-Mir-193-P1 Oan-Mir-193-P1a Obi-Mir-193-P1 Ocu-Mir-193-P1a Ofu-Mir-193-P1 Ovu-Mir-193-P1 Pab-Mir-193-P1a Pau-Mir-193-P1 Pbv-Mir-193-P1a Pcr-Mir-193-P1 Pma-Mir-193-P1 Pmi-Mir-193-P1 Pve-Mir-193-P1 Rno-Mir-193-P1a Rph-Mir-193-P1 Sha-Mir-193-P1a Snu-Mir-193-P1 Spt-Mir-193-P1a Sto-Mir-193-P1a Tca-Mir-193-P1 Tgu-Mir-193-P1a War-Mir-193-P1 Xbo-Mir-193-P1 Xla-Mir-193-P1a3 Xla-Mir-193-P1a4 Xtr-Mir-193-P1a

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Bilateria

Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)

KI636017.1: 1225-1286 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-193-P1a)

Mir-193-P1a KI636017.1: 1225-1286 [+] UCSC Ensembl
Mir-193-P2a KI636017.1: 2193-2253 [+] UCSC Ensembl

Seed

ACUGGCC

Precursor
(pre-Mir +30nt flank)

AGAGAGAAGAAUCCAGGGUGAAUCCAGAAACGGGGUUUUGGGGGCGAGAUGAGAUAUUUCAUACAAAACCAACUGGCCUGCAAAGUCCCGCCUUUGGAUUUCACUAAAUGCAACUGCAAUUC

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Structure

        10         20         30        40        50        60
AGAGAGAAGAAUCCAGG-   -|       AA    GU    G    G  A  AGAUAUUU 
                  GUG AAUCCAGA  CGGG  UUUG GGGC AG UG        C
                  CAC UUAGGUUU  GCCC  AAAC UCCG UC AC        A
CUUAACGUCAACGUAAAU   U^       CC    UG    G    G  A  CAAAACAU 
120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Bl	Br	Ey	Gi	He	In	Ki	Li	Mu	Ov	Pa	Re	Sk	Sp	Te	Ut

Star sequence

Cmi-Mir-193-P1a_5p*

mirBase accession

None

Sequence

0- CGGGGUUUUGGGGGCGAGAUGA -22

Get sequence

Mature sequence

Cmi-Mir-193-P1a_3p

mirBase accession

None

Sequence

40- AACUGGCCUGCAAAGUCCCGCC -62

Get sequence