Mir-193-P1a

MirGeneDB ID

Hsa-Mir-193-P1a

Family name

MIR-193 (all species)

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-193b

Paralogues

Hsa-Mir-193-P1b Hsa-Mir-193-P2a Hsa-Mir-193-P2b

Orthologues

Aae-Mir-193-P1 Aga-Mir-193-P1 Ami-Mir-193-P1a Bge-Mir-193-P1 Bta-Mir-193-P1a Cbr-Mir-193-P1-v1 Cel-Mir-193-P1-v1 Cfa-Mir-193-P1a Cja-Mir-193-P1a Cli-Mir-193-P1a Cmi-Mir-193-P1a Cpi-Mir-193-P1a Cpo-Mir-193-P1a Cte-Mir-193-P1 Dan-Mir-193-P1-v1 Dgr-Mir-193-P1 Dlo-Mir-193-P1 Dma-Mir-193-P1 Dme-Mir-193-P1-v1 Dmo-Mir-193-P1-v1 Dno-Mir-193-P1a Dpu-Mir-193-P1 Dre-Mir-193-P1a Dsi-Mir-193-P1-v1 Dya-Mir-193-P1-v1 Eba-Mir-193-P1 Eca-Mir-193-P1a Esc-Mir-193-P1 Ete-Mir-193-P1a Gga-Mir-193-P1a Gpa-Mir-193-P1 Hme-Mir-193-P1 Hru-Mir-193-P1 Isc-Mir-193-P1 Laf-Mir-193-P1a Lch-Mir-193-P1a Lgi-Mir-193-P1 Lhy-Mir-193-P1 Loc-Mir-193-P1a Mdo-Mir-193-P1a Mgi-Mir-193-P1 Mml-Mir-193-P1a Mmr-Mir-193-P1a Mmu-Mir-193-P1a Mom-Mir-193-P1 Mun-Mir-193-P1a Npo-Mir-193-P1 Oan-Mir-193-P1a Obi-Mir-193-P1 Ocu-Mir-193-P1a Ofu-Mir-193-P1 Ovu-Mir-193-P1 Pab-Mir-193-P1a Pau-Mir-193-P1 Pbv-Mir-193-P1a Pcr-Mir-193-P1 Pma-Mir-193-P1 Pmi-Mir-193-P1 Pve-Mir-193-P1 Rno-Mir-193-P1a Rph-Mir-193-P1 Sha-Mir-193-P1a Snu-Mir-193-P1 Spt-Mir-193-P1a Sto-Mir-193-P1a Tca-Mir-193-P1 Tgu-Mir-193-P1a War-Mir-193-P1 Xbo-Mir-193-P1 Xla-Mir-193-P1a3 Xla-Mir-193-P1a4 Xtr-Mir-193-P1a

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Bilateria

Genome context
(hg38)

chr16: 14303980-14304038 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-193-P1a)

Mir-193-P1a chr16: 14303980-14304038 [+] UCSC Ensembl
Mir-193-P2a chr16: 14309300-14309360 [+] UCSC Ensembl

Seed

ACUGGCC

Precursor
(pre-Mir +30nt flank)

AGAGGCUUUUGGAGGCUGUGGUCUCAGAAUCGGGGUUUUGAGGGCGAGAUGAGUUUAUGUUUUAUCCAACUGGCCCUCAAAGUCCCGCUUUUGGGGUCAUUCUGGACAGCGAGGGACUC

Get precursor sequence

Structure

        10          20        30        40        50         
AGAGGCUUUUGGAGGCU--|  GU       U    GU         G  A  AGUUUAU 
                   GUG  CUCAGAA CGGG  UUUGAGGGC AG UG       \
                   UAC  GGGUUUU GCCC  AAACUCCCG UC AC       G
CUCAGGGAGCGACAGGUCU^  UG       C    UG         G  A  CUAUUUU 
       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Dc	Dc	Dr	Dr	Xp	Xp	Bl	Br	Br	Ce	Ce	Co	Fo	He	Ki	Le	Li	Li	Lu	Pa	Pl	Pl	Sk	Sk	Sk	Sm	Sp	Sp	St	Te	Th	Ut

Star sequence

Hsa-Mir-193-P1a_5p*

mirBase accession

MIMAT0004767

Sequence

0- CGGGGUUUUGAGGGCGAGAUGA -22

Get sequence

Proposed targets

microrna.org: MIMAT0004767
TargetScanVert: hsa-miR-193b-5p
TargetMiner: hsa-miR-193b-5p
miRDB: MIMAT0004767

Mature sequence

Hsa-Mir-193-P1a_3p

mirBase accession

MIMAT0002819

Sequence

37- AACUGGCCCUCAAAGUCCCGCU -59

Get sequence

Proposed targets

microrna.org: MIMAT0002819
TargetScanVert: hsa-miR-193b-3p
TargetMiner: hsa-miR-193b-3p
miRDB: MIMAT0002819