Mir-193-P1a

MirGeneDB ID

Eca-Mir-193-P1a

Family name

MIR-193 (all species)

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-193b

Paralogues

Eca-Mir-193-P1b Eca-Mir-193-P2a Eca-Mir-193-P2b

Orthologues

Aae-Mir-193-P1 Aga-Mir-193-P1 Ami-Mir-193-P1a Bge-Mir-193-P1 Bta-Mir-193-P1a Cbr-Mir-193-P1-v1 Cel-Mir-193-P1-v1 Cfa-Mir-193-P1a Cja-Mir-193-P1a Cli-Mir-193-P1a Cmi-Mir-193-P1a Cpi-Mir-193-P1a Cpo-Mir-193-P1a Cte-Mir-193-P1 Dan-Mir-193-P1-v1 Dgr-Mir-193-P1 Dlo-Mir-193-P1 Dma-Mir-193-P1 Dme-Mir-193-P1-v1 Dmo-Mir-193-P1-v1 Dno-Mir-193-P1a Dpu-Mir-193-P1 Dre-Mir-193-P1a Dsi-Mir-193-P1-v1 Dya-Mir-193-P1-v1 Eba-Mir-193-P1 Esc-Mir-193-P1 Ete-Mir-193-P1a Gga-Mir-193-P1a Gpa-Mir-193-P1 Hme-Mir-193-P1 Hru-Mir-193-P1 Hsa-Mir-193-P1a Isc-Mir-193-P1 Laf-Mir-193-P1a Lch-Mir-193-P1a Lgi-Mir-193-P1 Lhy-Mir-193-P1 Loc-Mir-193-P1a Mdo-Mir-193-P1a Mgi-Mir-193-P1 Mml-Mir-193-P1a Mmr-Mir-193-P1a Mmu-Mir-193-P1a Mom-Mir-193-P1 Mun-Mir-193-P1a Npo-Mir-193-P1 Oan-Mir-193-P1a Obi-Mir-193-P1 Ocu-Mir-193-P1a Ofu-Mir-193-P1 Ovu-Mir-193-P1 Pab-Mir-193-P1a Pau-Mir-193-P1 Pbv-Mir-193-P1a Pcr-Mir-193-P1 Pma-Mir-193-P1 Pmi-Mir-193-P1 Pve-Mir-193-P1 Rno-Mir-193-P1a Rph-Mir-193-P1 Sha-Mir-193-P1a Snu-Mir-193-P1 Spt-Mir-193-P1a Sto-Mir-193-P1a Tca-Mir-193-P1 Tgu-Mir-193-P1a War-Mir-193-P1 Xbo-Mir-193-P1 Xla-Mir-193-P1a3 Xla-Mir-193-P1a4 Xtr-Mir-193-P1a

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Bilateria

Genome context
(GCA_002863925.1_EquCab3.0)

CM009160.1: 31850711-31850769 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-193-P1a)

Mir-193-P2a CM009160.1: 31845868-31845928 [-] UCSC Ensembl
Mir-193-P1a CM009160.1: 31850711-31850769 [-] UCSC Ensembl

Seed

ACUGGCC

Precursor
(pre-Mir +30nt flank)

AGGAGGUUUUCGAGUCUGUGGUCCCAGAAUCGGGGUUUUGAGGGCGAGAUGAGUUUAUGUUUUAUCCAACUGGCCCACAAAGUCCCGCUUUUGGGGUCAUUCCAAACAGCGAGGGAUUC

Get precursor sequence

Structure

        10          20        30        40        50         
AGGAGGUUUUCGAGUCU--|  GU       U    GU    A    G  A  AGUUUAU 
                   GUG  CCCAGAA CGGG  UUUG GGGC AG UG       \
                   UAC  GGGUUUU GCCC  AAAC CCCG UC AC       G
CUUAGGGAGCGACAAACCU^  UG       C    UG    A    G  A  CUAUUUU 
       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

Comment

There is a second Drosha cut -1 on both arms.

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Ps	Bo	Ca	Em	En	En	En	En	En	En	En	Gl	He	He	Ho	Im	Ki	Li	Lo	Lu	Ma	Ma	Mi	Pl	Sp	Te	Tr	Ut	Ut	Yo

Star sequence

Eca-Mir-193-P1a_5p*

mirBase accession

None

Sequence

0- CGGGGUUUUGAGGGCGAGAUGA -22

Get sequence

Mature sequence

Eca-Mir-193-P1a_3p

mirBase accession

MIMAT0013056

Sequence

37- AACUGGCCCACAAAGUCCCGCU -59

Get sequence