Mir-193-P2b

MirGeneDB ID

Sha-Mir-193-P2b

Family name

MIR-193 (all species)

Species

Tasmanian devil (Sarcophilus harrisii)

MiRBase ID

Paralogues

Sha-Mir-193-P1a Sha-Mir-193-P1b Sha-Mir-193-P2a

Orthologues

Aca-Mir-193-P2b Ami-Mir-193-P2b Bge-Mir-193-P2 Bta-Mir-193-P2b Cbr-Mir-193-P2-v1 Cel-Mir-193-P2-v1 Cfa-Mir-193-P2b Cja-Mir-193-P2b Cli-Mir-193-P2b Cmi-Mir-193-P2b Cpi-Mir-193-P2b Cpo-Mir-193-P2b Cte-Mir-193-P2 Dgr-Mir-193-P2 Dlo-Mir-193-P2 Dno-Mir-193-P2b Dre-Mir-193-P2b1 Dre-Mir-193-P2b2 Ebu-Mir-193-P2 Eca-Mir-193-P2b Ete-Mir-193-P2b Gga-Mir-193-P2b Gja-Mir-193-P2b Gmo-Mir-193-P2b2 Hme-Mir-193-P2 Hru-Mir-193-P2 Hsa-Mir-193-P2b Laf-Mir-193-P2b Lch-Mir-193-P2b Lgi-Mir-193-P2 Llo-Mir-193-P2-v1 Loc-Mir-193-P2b Mal-Mir-193-P2b2 Mgi-Mir-193-P2 Mml-Mir-193-P2b Mmr-Mir-193-P2b Mmu-Mir-193-P2b Mun-Mir-193-P2b Neu-Mir-193-P2b Oan-Mir-193-P2b Ocu-Mir-193-P2b Pab-Mir-193-P2b Pau-Mir-193-P2 Pbv-Mir-193-P2b Pdu-Mir-193-P2 Pfl-Mir-193-P2 Pma-Mir-193-P2 Pmi-Mir-193-P2 Pve-Mir-193-P2 Rno-Mir-193-P2b Rph-Mir-193-P2 Sko-Mir-193-P2 Snu-Mir-193-P2 Spt-Mir-193-P2b Spu-Mir-193-P2 Sro-Mir-193-P2 Sto-Mir-193-P2b Tca-Mir-193-P2 Tgu-Mir-193-P2b Tni-Mir-193-P2b2 Xbo-Mir-193-P2

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Bilateria

Genome context
(DEVIL_add)

GL857000.1: 4455894-4455956 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-193-P2b)

Mir-193-P2b GL857000.1: 4455894-4455956 [-] UCSC Ensembl
Mir-193-P1b GL857000.1: 4480007-4480062 [-] UCSC Ensembl

Seed

AAUGCCC

Precursor
(pre-Mir +30nt flank)

UGGAGAGCCCUCAAAGGCAGCAAGAAAAAUGAGGGACUUUCAGGGGCAGCUGUGUUUUAUUAACUCAGUCAUAAUGCCCCUAAAAAUCCUUAUUGUUCUUGCAAUGUUCAUCUGGCAUCUCCA

Get precursor sequence

Structure

        10          20        30        40        50        60  
UGGAGAGCCCUCAAAGGCA--|      A        AC   C       GC    UUUUAUU 
                     GCAAGAA AAUGAGGG  UUU AGGGGCA  UGUG       \
                     CGUUCUU UUAUUCCU  AAA UCCCCGU  AUAC       A
ACCUCUACGGUCUACUUGUAA^      G        AA   -       A-    UGACUCA 
 120       110       100        90         80         70

Deep sequencing

Go to detailed chart

Comment

There is a second Drosha cut +1 on the 5p arm.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Bo	Br	He	Ki	Li	Ly	Pa	Sk	Sp	Te

Star sequence

Sha-Mir-193-P2b_5p* (predicted)

mirBase accession

None

Sequence

0- GAGGGACUUUCAGGGGCAGCUGUG -24

Get sequence

Mature sequence

Sha-Mir-193-P2b_3p

mirBase accession

None

Sequence

41- UAAUGCCCCUAAAAAUCCUUAU -63

Get sequence