Mir-193-P2b1

MirGeneDB ID

Dre-Mir-193-P2b1

Family name

MIR-193 (all species)

Species

Zebrafish (Danio rerio)

MiRBase ID

dre-mir-365-2

Paralogues

Dre-Mir-193-P1a Dre-Mir-193-P1b1 Dre-Mir-193-P1b2 Dre-Mir-193-P2a Dre-Mir-193-P2b2

Orthologues

Aca-Mir-193-P2b Ami-Mir-193-P2b Bge-Mir-193-P2 Bta-Mir-193-P2b Cbr-Mir-193-P2-v1 Cel-Mir-193-P2-v1 Cfa-Mir-193-P2b Cja-Mir-193-P2b Cli-Mir-193-P2b Cmi-Mir-193-P2b Cpi-Mir-193-P2b Cpo-Mir-193-P2b Cte-Mir-193-P2 Dgr-Mir-193-P2 Dlo-Mir-193-P2 Dno-Mir-193-P2b Ebu-Mir-193-P2 Eca-Mir-193-P2b Ete-Mir-193-P2b Gga-Mir-193-P2b Gja-Mir-193-P2b Hme-Mir-193-P2 Hru-Mir-193-P2 Hsa-Mir-193-P2b Laf-Mir-193-P2b Lch-Mir-193-P2b Lgi-Mir-193-P2 Llo-Mir-193-P2-v1 Loc-Mir-193-P2b Mgi-Mir-193-P2 Mml-Mir-193-P2b Mmr-Mir-193-P2b Mmu-Mir-193-P2b Mun-Mir-193-P2b Neu-Mir-193-P2b Oan-Mir-193-P2b Ocu-Mir-193-P2b Pab-Mir-193-P2b Pau-Mir-193-P2 Pbv-Mir-193-P2b Pdu-Mir-193-P2 Pfl-Mir-193-P2 Pma-Mir-193-P2 Pmi-Mir-193-P2 Pve-Mir-193-P2 Rno-Mir-193-P2b Rph-Mir-193-P2 Sha-Mir-193-P2b Sko-Mir-193-P2 Snu-Mir-193-P2 Spt-Mir-193-P2b Spu-Mir-193-P2 Sro-Mir-193-P2 Sto-Mir-193-P2b Tca-Mir-193-P2 Tgu-Mir-193-P2b Xbo-Mir-193-P2

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Bilateria

Genome context
(danRer11)

chr3: 35961005-35961067 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-193-P2b1)

Mir-193-P1b1 chr3: 35959932-35959993 [+] UCSC Ensembl
Mir-193-P2b1 chr3: 35961005-35961067 [+] UCSC Ensembl

Seed

AAUGCCC

Precursor
(pre-Mir +30nt flank)

GAAGAGGACCCAAAAGGCAGCAAGAAAAAUGAGGGACUUUUAGGGGCAGCUGUGUUUUAUUAACCCAGUCAUAAUGCCCCUAAAAAUCCUUAUUGCUCUUGCAAUUUUCAGCGUCCCUGCGUG

Get precursor sequence

Structure

        10          20        30        40        50        60  
GAAGAGGACCCAAAAGGCA--|     AA        AC           GC    UUUUAUU 
                     GCAAGA  AAUGAGGG  UUUUAGGGGCA  UGUG       \
                     CGUUCU  UUAUUCCU  AAAAUCCCCGU  AUAC       A
GUGCGUCCCUGCGACUUUUAA^     CG        A-           A-    UGACCCA 
 120       110       100        90         80         70

Deep sequencing

Go to detailed chart

Comment

There is a second Drosha cut +1 on the 5p arm.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Br	Em	Ey	Gu	Gu	He	Li	Li	Ov	Te

Star sequence

Dre-Mir-193-P2b1_5p*

mirBase accession

None

Sequence

0- GAGGGACUUUUAGGGGCAGCUGUG -24

Get sequence

Mature sequence

Dre-Mir-193-P2b1_3p

mirBase accession

MIMAT0001875

Sequence

41- UAAUGCCCCUAAAAAUCCUUAU -63

Get sequence

Proposed targets

TargetScanFish: dre-miR-365