MirGeneDB ID | Gja-Mir-193-P2b |
Family name |
MIR-193 (all species) |
Seed |
AAUGCCC |
Species |
Schlegels Japanese gecko (Gekko japonicus) |
MiRBase ID |
|
Paralogues |
Gja-Mir-193-P1b
|
Orthologues |
Aca-Mir-193-P2b
Ami-Mir-193-P2b
Bge-Mir-193-P2
Bta-Mir-193-P2b
Cbr-Mir-193-P2-v1
Cbr-Mir-193-P2-v2
Cel-Mir-193-P2-v1
Cel-Mir-193-P2-v2
Cfa-Mir-193-P2b
Cgi-Mir-193-P2
Cli-Mir-193-P2b
Cmi-Mir-193-P2b
Cpi-Mir-193-P2b
Cpo-Mir-193-P2b
Cte-Mir-193-P2
Dno-Mir-193-P2b
Dre-Mir-193-P2b1
Dre-Mir-193-P2b2
Ebu-Mir-193-P2
Ete-Mir-193-P2b
Gga-Mir-193-P2b
Gmo-Mir-193-P2b2
Hme-Mir-193-P2
Hsa-Mir-193-P2b
Lch-Mir-193-P2b
Lgi-Mir-193-P2
Loc-Mir-193-P2b
Mal-Mir-193-P2b2
Mml-Mir-193-P2b
Mmu-Mir-193-P2b
Mun-Mir-193-P2b
Oan-Mir-193-P2b
Ocu-Mir-193-P2b
Pbv-Mir-193-P2b
Pfl-Mir-193-P2
Pma-Mir-193-P2
Pmi-Mir-193-P2
Rno-Mir-193-P2b
Sha-Mir-193-P2b
Sko-Mir-193-P2
Spt-Mir-193-P2b
Spu-Mir-193-P2
Sto-Mir-193-P2b
Tca-Mir-193-P2
Tgu-Mir-193-P2b
Tni-Mir-193-P2b2
Xbo-Mir-193-P2
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Bilateria
|
Genome context (GCF_001447785.1_Gekko_japonicus) |
NW_015166472.1: 115094-115155 [+]
|
Precursor (pre-Mir +30nt flank) |
GGAGAGCACCAAGAGGCAGCAAGAAAAAUGAGGGACUUUCAGGGGCAGCUGUGUUUUACUAACCCAGUCAUAAUGCCCCUAAAAAUCCUUAUUGUUCUUGCAAUGUUCAGCUGUGAUUGCCG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GGAGAGCACCAAGAGGCA---| A AC C GC UUUUACU
GCAAGAA AAUGAGGG UUU AGGGGCA UGUG \
CGUUCUU UUAUUCCU AAA UCCCCGU AUAC A
GCCGUUAGUGUCGACUUGUAA^ G AA - A- UGACCCA
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Drosha cut -1 on both arms. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Gja-Mir-193-P2b_5p* |
mirBase accession | None |
Sequence |
0- AGGGACUUUCAGGGGCAGCUGUG -23
Get sequence
|
Mature sequence |
Gja-Mir-193-P2b_3p |
mirBase accession | None |
Sequence |
40- UAAUGCCCCUAAAAAUCCUUAU -62
Get sequence
|