MirGeneDB ID | Sha-Mir-193-P1b |
Family name |
MIR-193 (all species) |
Species |
Tasmanian devil (Sarcophilus harrisii) |
MiRBase ID |
|
Paralogues |
Sha-Mir-193-P1a
Sha-Mir-193-P2a
Sha-Mir-193-P2b
|
Orthologues |
Aae-Mir-193-P1
Aca-Mir-193-P1b
Aga-Mir-193-P1
Ami-Mir-193-P1b
Bge-Mir-193-P1
Bta-Mir-193-P1b
Cbr-Mir-193-P1-v1
Cel-Mir-193-P1-v1
Cfa-Mir-193-P1b
Cja-Mir-193-P1b
Cmi-Mir-193-P1b
Cpi-Mir-193-P1b
Cpo-Mir-193-P1b
Cte-Mir-193-P1
Dan-Mir-193-P1-v1
Dgr-Mir-193-P1
Dlo-Mir-193-P1
Dma-Mir-193-P1
Dme-Mir-193-P1-v1
Dmo-Mir-193-P1-v1
Dno-Mir-193-P1b
Dpu-Mir-193-P1
Dre-Mir-193-P1b1
Dre-Mir-193-P1b2
Dsi-Mir-193-P1-v1
Dya-Mir-193-P1-v1
Eba-Mir-193-P1
Eca-Mir-193-P1b
Esc-Mir-193-P1
Ete-Mir-193-P1b
Gga-Mir-193-P1b
Gja-Mir-193-P1b
Gmo-Mir-193-P1b2
Gpa-Mir-193-P1
Hme-Mir-193-P1
Hru-Mir-193-P1
Hsa-Mir-193-P1b
Isc-Mir-193-P1
Laf-Mir-193-P1b
Lch-Mir-193-P1b
Lgi-Mir-193-P1
Lhy-Mir-193-P1
Loc-Mir-193-P1b
Loc-Mir-193-P1b-as
Mal-Mir-193-P1b2
Mdo-Mir-193-P1b
Mgi-Mir-193-P1
Mml-Mir-193-P1b
Mmr-Mir-193-P1b
Mmu-Mir-193-P1b
Mom-Mir-193-P1
Mun-Mir-193-P1b
Neu-Mir-193-P1b
Npo-Mir-193-P1
Oan-Mir-193-P1b
Obi-Mir-193-P1
Ocu-Mir-193-P1b
Ofu-Mir-193-P1
Ovu-Mir-193-P1
Pab-Mir-193-P1b
Pau-Mir-193-P1
Pbv-Mir-193-P1b
Pcr-Mir-193-P1
Pma-Mir-193-P1
Pmi-Mir-193-P1
Pve-Mir-193-P1
Rno-Mir-193-P1b
Rph-Mir-193-P1
Snu-Mir-193-P1
Spt-Mir-193-P1b
Sto-Mir-193-P1b
Tca-Mir-193-P1
Tgu-Mir-193-P1b
Tni-Mir-193-P1b2
War-Mir-193-P1
Xbo-Mir-193-P1
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Bilateria
|
Genome context (DEVIL_add) |
GL857000.1: 4480007-4480062 [-]
UCSC
Ensembl
|
Clustered miRNAs (< 50kb from Mir-193-P1b) |
Mir-193-P2b
GL857000.1: 4455894-4455956 [-]
UCSC
Ensembl
Mir-193-P1b
GL857000.1: 4480007-4480062 [-]
UCSC
Ensembl
|
Seed |
GGGUCUU |
Precursor (pre-Mir +30nt flank) |
NNNNNNNNNNNNNNNNNNGGAGUUGAGGACUGGGUCUUUGCGGGCGAGAUGAGGAUGUCAAUUCAACUGGCCUACAAAGUCCCAGUUCUCGGUUCCCAAAGACCUGCGCCCCUCUC
Get precursor sequence
|
Structure | 10 20 30 40 50
NNNNNNNNNNNNNNNNNN--| UU U CG G A GGAU
GGAG GAGGACUGGG CUUUG GGC AG UGA G
CCUU CUCUUGACCC GAAAC CCG UC ACU U
CUCUCCCCGCGUCCAGAAAC^ GG U AU G A UAAC
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | Not in assembly but in trace archive. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
Bo |
Br |
He |
Ki |
Li |
Ly |
Pa |
Sk |
Sp |
Te |
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Mature sequence |
Sha-Mir-193-P1b_5p |
mirBase accession | None |
Sequence |
0- UGGGUCUUUGCGGGCGAGAUGA -22
Get sequence
|
Star sequence |
Sha-Mir-193-P1b_3p* |
mirBase accession | None |
Sequence |
34- AACUGGCCUACAAAGUCCCAGU -56
Get sequence
|