Mir-193-P1b-as

MirGeneDB ID

Loc-Mir-193-P1b-as

Family name

MIR-193 (all species)

Species

Spotted gar (Lepisosteus oculatus)

MiRBase ID

Paralogues

Loc-Mir-193-P1a Loc-Mir-193-P1b Loc-Mir-193-P2a Loc-Mir-193-P2b

Orthologues

Aae-Mir-193-P1 Aca-Mir-193-P1b Aga-Mir-193-P1 Ami-Mir-193-P1b Bge-Mir-193-P1 Bta-Mir-193-P1b Cbr-Mir-193-P1-v1 Cel-Mir-193-P1-v1 Cfa-Mir-193-P1b Cja-Mir-193-P1b Cmi-Mir-193-P1b Cpi-Mir-193-P1b Cpo-Mir-193-P1b Cte-Mir-193-P1 Dan-Mir-193-P1-v1 Dgr-Mir-193-P1 Dlo-Mir-193-P1 Dma-Mir-193-P1 Dme-Mir-193-P1-v1 Dmo-Mir-193-P1-v1 Dno-Mir-193-P1b Dpu-Mir-193-P1 Dre-Mir-193-P1b1 Dre-Mir-193-P1b2 Dsi-Mir-193-P1-v1 Dya-Mir-193-P1-v1 Eba-Mir-193-P1 Eca-Mir-193-P1b Esc-Mir-193-P1 Ete-Mir-193-P1b Gga-Mir-193-P1b Gja-Mir-193-P1b Gmo-Mir-193-P1b2 Gpa-Mir-193-P1 Hme-Mir-193-P1 Hru-Mir-193-P1 Hsa-Mir-193-P1b Isc-Mir-193-P1 Laf-Mir-193-P1b Lch-Mir-193-P1b Lgi-Mir-193-P1 Lhy-Mir-193-P1 Mal-Mir-193-P1b2 Mdo-Mir-193-P1b Mgi-Mir-193-P1 Mml-Mir-193-P1b Mmr-Mir-193-P1b Mmu-Mir-193-P1b Mom-Mir-193-P1 Mun-Mir-193-P1b Neu-Mir-193-P1b Npo-Mir-193-P1 Oan-Mir-193-P1b Obi-Mir-193-P1 Ocu-Mir-193-P1b Ofu-Mir-193-P1 Ovu-Mir-193-P1 Pab-Mir-193-P1b Pau-Mir-193-P1 Pbv-Mir-193-P1b Pcr-Mir-193-P1 Pma-Mir-193-P1 Pmi-Mir-193-P1 Pve-Mir-193-P1 Rno-Mir-193-P1b Rph-Mir-193-P1 Sha-Mir-193-P1b Snu-Mir-193-P1 Spt-Mir-193-P1b Sto-Mir-193-P1b Tca-Mir-193-P1 Tgu-Mir-193-P1b Tni-Mir-193-P1b2 War-Mir-193-P1 Xbo-Mir-193-P1

Node of Origin (locus)

L. oculatus

Node of Origin (family)

Bilateria

Genome context
(LepOcu1)

LG10: 41575613-41575675 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-193-P1b-as)

Mir-193-P1b-as LG10: 41575613-41575675 [-] Ensembl
Mir-193-P1b LG10: 41575615-41575677 [+] Ensembl
Mir-193-P2b LG10: 41579744-41579805 [+] Ensembl

Seed

CCUCGCC

Precursor
(pre-Mir +30nt flank)

GGGGCCGCGCCGGUCGGGCGCCCCAGGGACUGGGACUUUGUAGGGCCAGUUGAGAGAGGGGAACAGACCUCACCUCGCCCGCAAAGACCCAGCCCCUGUCGCGCACACACUCGCCGCAGGGUC

Get precursor sequence

Structure

        10          20        30        40        50        60 
GGGGCCGCGCCGGUCGG--|   CC     A     A      A    C  U   GAGAGGG 
                   GCGC  CAGGG CUGGG CUUUGU GGGC AG UGA       G
                   CGCG  GUCCC GACCC GAAACG CCCG UC ACU       A
CUGGGACGCCGCUCACACA^   CU     C     A      -    C  C   CCAGACA 
 120       110       100        90         80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Br	Br	He	He	He	He	Ov	Ov	Ov	Ov	Te	Te	Te	Te	To

Star sequence

Loc-Mir-193-P1b-as_5p*

mirBase accession

None

Sequence

0- UGGGACUUUGUAGGGCCAGUUGA -23

Get sequence

Mature sequence

Loc-Mir-193-P1b-as_3p

mirBase accession

None

Sequence

41- ACCUCGCCCGCAAAGACCCAGC -63

Get sequence