MirGeneDB 2.1

MirGeneDB ID

Lpo-Mir-193-P2r

Family name MIR-193 (all species)
Seed AAUGCCC
Species Atlantic horseshoe crab (Limulus polyphemus)
MiRBase ID
Paralogues Lpo-Mir-193-P1r  Lpo-Mir-193-P1s  Lpo-Mir-193-P1t  Lpo-Mir-193-P2n  Lpo-Mir-193-P2o 
Orthologues Bge-Mir-193-P2  Cbr-Mir-193-P2-v1  Cbr-Mir-193-P2-v2  Cel-Mir-193-P2-v1  Cel-Mir-193-P2-v2  Cgi-Mir-193-P2  Cte-Mir-193-P2  Ebu-Mir-193-P2  Hme-Mir-193-P2  Lgi-Mir-193-P2  Pfl-Mir-193-P2  Pma-Mir-193-P2  Pmi-Mir-193-P2  Sko-Mir-193-P2  Spu-Mir-193-P2  Tca-Mir-193-P2  Xbo-Mir-193-P2 
Node of Origin (locus) L. polyphemus
Node of Origin (family) Bilateria
Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)
NW_013665895.1: 74428-74489 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
CCAAACGAUACCGAGAAGCUGUGGUAAGCUUGGGGUUUCUAACCGGCAUUCACCAUGAUCUGAAUAUAUGCAAUGCCCUUGGAAAUCCCAAAUAUACUCAGCAAAUUACAUCAUUCCUGAAG
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Structure
        10           20        30        40        50         60
CCAAACGAUACCGAGAA---|   U    AGC             CC      -  CCAUGAU 
                    GCUG GGUA   UUGGGGUUUCUAA  GGCAUU CA       C
                    CGAC UCAU   AACCCUAAAGGUU  CCGUAA GU       U
GAAGUCCUUACUACAUUAAA^   -    AUA             C-      C  AUAUAAG 
120       110       100         90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Fe Fe Fe Ma Ma To
Star sequence

Lpo-Mir-193-P2r_5p* (predicted)

mirBase accessionNone
Sequence
0- UGGGGUUUCUAACCGGCAUUCAC -23
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Mature sequence

Lpo-Mir-193-P2r_3p

mirBase accessionNone
Sequence
40- CAAUGCCCUUGGAAAUCCCAAA -62
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