Mir-193-P1t

MirGeneDB ID

Lpo-Mir-193-P1t

Family name

MIR-193 (all species)

Species

Atlantic horseshoe crab (Limulus polyphemus)

MiRBase ID

Paralogues

Lpo-Mir-193-P1r Lpo-Mir-193-P1s Lpo-Mir-193-P2n Lpo-Mir-193-P2o Lpo-Mir-193-P2r

Orthologues

Aae-Mir-193-P1 Aga-Mir-193-P1 Bge-Mir-193-P1 Cbr-Mir-193-P1-v1 Cel-Mir-193-P1-v1 Cte-Mir-193-P1 Dan-Mir-193-P1-v1 Dgr-Mir-193-P1 Dlo-Mir-193-P1 Dma-Mir-193-P1 Dme-Mir-193-P1-v1 Dmo-Mir-193-P1-v1 Dpu-Mir-193-P1 Dsi-Mir-193-P1-v1 Dya-Mir-193-P1-v1 Eba-Mir-193-P1 Esc-Mir-193-P1 Gpa-Mir-193-P1 Hme-Mir-193-P1 Hru-Mir-193-P1 Isc-Mir-193-P1 Lgi-Mir-193-P1 Lhy-Mir-193-P1 Mgi-Mir-193-P1 Mom-Mir-193-P1 Npo-Mir-193-P1 Obi-Mir-193-P1 Ofu-Mir-193-P1 Ovu-Mir-193-P1 Pau-Mir-193-P1 Pcr-Mir-193-P1 Pma-Mir-193-P1 Pmi-Mir-193-P1 Pve-Mir-193-P1 Rph-Mir-193-P1 Snu-Mir-193-P1 Tca-Mir-193-P1 War-Mir-193-P1 Xbo-Mir-193-P1

Node of Origin (locus)

L. polyphemus

Node of Origin (family)

Bilateria

Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)

NW_013674669.1: 30191-30255 [+] Ensembl

Seed

ACUGGCC

Precursor
(pre-Mir +30nt flank)

GGGGGAAAAAAAAGUGUGAUGCGUAGCGCCCGGGUCUUAGUGGUACAGUGGGCCUCAGUCGCUUCGGCACGUCUACUGGCCUACUAAGUCCCAAGCGCUGCGUGUUUCCAUCUCCAGUAACACCA

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Structure

        10          20        30        40        50        60  
GGGGGAAAAAAAAGUGU--|           CC   U        UA       CCUCAGUCG 
                   GAUGCGUAGCGC  GGG CUUAGUGG  CAGUGGG         \
                   UUGUGCGUCGCG  CCC GAAUCAUC  GUCAUCU         C
ACCACAAUGACCUCUACCU^           AA   U        CG       GCACGGCUU 
   120       110       100        90        80        70

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Ge	Ge	So	So	So	To

Star sequence

Lpo-Mir-193-P1t_5p* (predicted)

mirBase accession

None

Sequence

0- CGGGUCUUAGUGGUACAGUGGG -22

Get sequence

Mature sequence

Lpo-Mir-193-P1t_3p

mirBase accession

None

Sequence

43- UACUGGCCUACUAAGUCCCAAG -65

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