Mir-193-P1u

MirGeneDB ID

Csc-Mir-193-P1u

Family name

MIR-193 (all species)

Species

Arizona bark scorpion (Centruroides sculpturatus)

MiRBase ID

Paralogues

Csc-Mir-193-P2v

Orthologues

Aae-Mir-193-P1 Aga-Mir-193-P1 Bge-Mir-193-P1 Cbr-Mir-193-P1-v1 Cel-Mir-193-P1-v1 Cte-Mir-193-P1 Dan-Mir-193-P1-v1 Dgr-Mir-193-P1 Dlo-Mir-193-P1 Dma-Mir-193-P1 Dme-Mir-193-P1-v1 Dmo-Mir-193-P1-v1 Dpu-Mir-193-P1 Dsi-Mir-193-P1-v1 Dya-Mir-193-P1-v1 Eba-Mir-193-P1 Esc-Mir-193-P1 Gpa-Mir-193-P1 Hme-Mir-193-P1 Hru-Mir-193-P1 Isc-Mir-193-P1 Lgi-Mir-193-P1 Lhy-Mir-193-P1 Mgi-Mir-193-P1 Mom-Mir-193-P1 Npo-Mir-193-P1 Obi-Mir-193-P1 Ofu-Mir-193-P1 Ovu-Mir-193-P1 Pau-Mir-193-P1 Pcr-Mir-193-P1 Pma-Mir-193-P1 Pmi-Mir-193-P1 Pve-Mir-193-P1 Rph-Mir-193-P1 Snu-Mir-193-P1 Tca-Mir-193-P1 War-Mir-193-P1 Xbo-Mir-193-P1

Node of Origin (locus)

C. sculpturatus

Node of Origin (family)

Bilateria

Genome context
(GCF_000671375.1_CSC)

NW_019384618.1: 321572-321628 [-] Ensembl

Seed

ACUGGCC

Precursor
(pre-Mir +30nt flank)

AACCGAAGUCCUACAGUCGCACACCGCGUCUGGGCCUUAGUGGUACAGUGGAAGGUUUGACUAUCUACUGGCCUGCUAAGUCCCAAACGCUGUGGGCCUCACGUCGCCAUUAAAACU

Get precursor sequence

Structure

        10          20        30        40        50        
AACCGAAGUCCUACAGUC--| A   C    C    C     UG UA       AGGUU 
                    GC CAC GCGU UGGG CUUAG  G  CAGUGGA     \
                    CG GUG CGCA ACCC GAAUC  C  GUCAUCU     U
UCAAAAUUACCGCUGCACUC^ G   U    A    U     GU CG       AUCAG 
     110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Fe	Fe	Fe	Fe	Ma	Ma	Ma

Star sequence

Csc-Mir-193-P1u_5p*

mirBase accession

None

Sequence

0- UGGGCCUUAGUGGUACAGUGGA -22

Get sequence

Mature sequence

Csc-Mir-193-P1u_3p

mirBase accession

None

Sequence

35- UACUGGCCUGCUAAGUCCCAAA -57

Get sequence