Mir-193-P1k

MirGeneDB ID

Bfl-Mir-193-P1k

Family name

MIR-193 (all species)

Seed

ACUGGCC

Species

Florida lancelet (Branchiostoma floridae)

MiRBase ID

bfl-mir-193b

Paralogues

Bfl-Mir-193-P1e Bfl-Mir-193-P1j Bfl-Mir-193-P1o1a Bfl-Mir-193-P1o1b Bfl-Mir-193-P1o2

Orthologues

Aae-Mir-193-P1 Bge-Mir-193-P1 Bla-Mir-193-P1k Cbr-Mir-193-P1-v1 Cbr-Mir-193-P1-v2 Cel-Mir-193-P1-v1 Cel-Mir-193-P1-v2 Cgi-Mir-193-P1 Cte-Mir-193-P1 Dan-Mir-193-P1-v1 Dan-Mir-193-P1-v2 Dan-Mir-193-P1-v3 Dan-Mir-193-P1-v4 Dma-Mir-193-P1 Dme-Mir-193-P1-v1 Dme-Mir-193-P1-v2 Dme-Mir-193-P1-v3 Dme-Mir-193-P1-v4 Dmo-Mir-193-P1-v1 Dmo-Mir-193-P1-v2 Dmo-Mir-193-P1-v3 Dmo-Mir-193-P1-v4 Dpu-Mir-193-P1 Dsi-Mir-193-P1-v1 Dsi-Mir-193-P1-v2 Dsi-Mir-193-P1-v3 Dsi-Mir-193-P1-v4 Dya-Mir-193-P1-v1 Dya-Mir-193-P1-v2 Dya-Mir-193-P1-v3 Dya-Mir-193-P1-v4 Esc-Mir-193-P1 Hme-Mir-193-P1 Isc-Mir-193-P1 Lgi-Mir-193-P1 Npo-Mir-193-P1 Obi-Mir-193-P1 Ovu-Mir-193-P1 Pma-Mir-193-P1 Pmi-Mir-193-P1 Tca-Mir-193-P1 Xbo-Mir-193-P1

Node of Origin (locus)

Branchiostoma

Node of Origin (family)

Bilateria

Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic)

NC_049982.1: 12294554-12294613 [+] UCSC

Precursor
(pre-Mir +30nt flank)

AGUUGGAAGAUGAAAUGCUGACUUGUGAACAGUGACUUGUGGGGUCAGUCGGUAGAAAGAGAUUUUCCUACUGGCCUGUCAAGUCGGUGUUCACAUGAGCAGCUCAUACAGCUCACGCAG

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Structure

        10         20         30        40        50         
AGUUGGAAGAUGAAAUG-   ACU-|       G       UG        C  UAGAAA 
                  CUG    UGUGAACA UGACUUG  GGGUCAGU GG      G
                  GAC    ACACUUGU GCUGAAC  UCCGGUCA CC      A
GACGCACUCGACAUACUC   GAGU^       G       UG        U  UUUUAG 
.       110       100        90        80        70        60

Deep sequencing

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3' NTU

Motifs

Tissue expression

To

Star sequence

Bfl-Mir-193-P1k_5p* (predicted)

mirBase accession

None

Sequence

0- AGUGACUUGUGGGGUCAGUCGG -22

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Mature sequence

Bfl-Mir-193-P1k_3p

mirBase accession

MIMAT0020111

Sequence

38- UACUGGCCUGUCAAGUCGGUGU -60

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