Mir-193-P1o2

MirGeneDB ID

Bfl-Mir-193-P1o2

Family name

MIR-193 (all species)

Seed

ACUGGCU

Species

Florida lancelet (Branchiostoma floridae)

MiRBase ID

Paralogues

Bfl-Mir-193-P1e Bfl-Mir-193-P1j Bfl-Mir-193-P1k Bfl-Mir-193-P1o1a Bfl-Mir-193-P1o1b

Orthologues

Aae-Mir-193-P1 Bge-Mir-193-P1 Cbr-Mir-193-P1-v1 Cbr-Mir-193-P1-v2 Cel-Mir-193-P1-v1 Cel-Mir-193-P1-v2 Cgi-Mir-193-P1 Cte-Mir-193-P1 Dan-Mir-193-P1-v1 Dan-Mir-193-P1-v2 Dan-Mir-193-P1-v3 Dan-Mir-193-P1-v4 Dma-Mir-193-P1 Dme-Mir-193-P1-v1 Dme-Mir-193-P1-v2 Dme-Mir-193-P1-v3 Dme-Mir-193-P1-v4 Dmo-Mir-193-P1-v1 Dmo-Mir-193-P1-v2 Dmo-Mir-193-P1-v3 Dmo-Mir-193-P1-v4 Dpu-Mir-193-P1 Dsi-Mir-193-P1-v1 Dsi-Mir-193-P1-v2 Dsi-Mir-193-P1-v3 Dsi-Mir-193-P1-v4 Dya-Mir-193-P1-v1 Dya-Mir-193-P1-v2 Dya-Mir-193-P1-v3 Dya-Mir-193-P1-v4 Efe-Mir-193-P1o Esc-Mir-193-P1 Hme-Mir-193-P1 Isc-Mir-193-P1 Lgi-Mir-193-P1 Npo-Mir-193-P1 Obi-Mir-193-P1 Ovu-Mir-193-P1 Pma-Mir-193-P1 Pmi-Mir-193-P1 Tca-Mir-193-P1 Xbo-Mir-193-P1

Node of Origin (locus)

B. floridae

Node of Origin (family)

Bilateria

Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic)

NC_049982.1: 12293365-12293425 [+] UCSC

Precursor
(pre-Mir +30nt flank)

GUUUAACAAAACAUGCUCACCGUUACCGACCGGGGCCUCGUGAGUCAGACGGUUCUAUAUAUCGUAUCCUACUGGCUCUCAAAGUCCUGAUCGGCUGCGGUGACUUUCCGACAGUGUGCUG

Get precursor sequence

Structure

        10          20        30        40        50          
GUUUAACAAAACAUGCU--|     UA    C      CUCGU       AC  UUCUAUA 
                   CACCGU  CCGA CGGGGC     GAGUCAG  GG       \
                   GUGGCG  GGCU GUCCUG     CUCGGUC  CC       U
GUCGUGUGACAGCCUUUCA^     UC    A      AAACU       AU  UAUGCUA 
 .       110       100        90        80        70

Deep sequencing

3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

To

Star sequence

Bfl-Mir-193-P1o2_5p* (predicted)

mirBase accession

None

Sequence

0- CGGGGCCUCGUGAGUCAGACGG -22

Get sequence

Mature sequence

Bfl-Mir-193-P1o2_3p (predicted)

mirBase accession

None

Sequence

39- UACUGGCUCUCAAAGUCCUGAU -61

Get sequence