Mir-193-P2-v2

MirGeneDB ID

Cbr-Mir-193-P2-v2

Family name

MIR-193 (all species)

Seed

AUGCCCU

Species

Roundworm (Caenorhabditis briggsae)

MiRBase ID

cbr-mir-786

Paralogues

Cbr-Mir-193-P1-v1 Cbr-Mir-193-P1-v2 Cbr-Mir-193-P2-v1

Orthologues

Aca-Mir-193-P2b Ami-Mir-193-P2a Ami-Mir-193-P2b Bge-Mir-193-P2 Bta-Mir-193-P2a Bta-Mir-193-P2b Cel-Mir-193-P2-v1 Cel-Mir-193-P2-v2 Cfa-Mir-193-P2a Cfa-Mir-193-P2b Cgi-Mir-193-P2 Cli-Mir-193-P2a Cli-Mir-193-P2b Cmi-Mir-193-P2a Cmi-Mir-193-P2b Cpi-Mir-193-P2a Cpi-Mir-193-P2b Cpo-Mir-193-P2a Cpo-Mir-193-P2b Csc-Mir-193-P2v Cte-Mir-193-P2 Dno-Mir-193-P2a Dno-Mir-193-P2b Dre-Mir-193-P2a Dre-Mir-193-P2b1 Dre-Mir-193-P2b2 Ebu-Mir-193-P2 Efe-Mir-193-P2c-v1 Efe-Mir-193-P2c-v2 Efe-Mir-193-P2d-v1 Efe-Mir-193-P2d-v2 Efe-Mir-193-P2e-v1 Efe-Mir-193-P2e-v2 Efe-Mir-193-P2f-v1 Efe-Mir-193-P2f-v2 Ete-Mir-193-P2a Ete-Mir-193-P2b Gga-Mir-193-P2a Gga-Mir-193-P2b Gja-Mir-193-P2b Gmo-Mir-193-P2b2 Hme-Mir-193-P2 Hsa-Mir-193-P2a Hsa-Mir-193-P2b Lan-Mir-193-P2p Lan-Mir-193-P2q Lch-Mir-193-P2a Lch-Mir-193-P2b Lgi-Mir-193-P2 Loc-Mir-193-P2a Loc-Mir-193-P2b Lpo-Mir-193-P2n Lpo-Mir-193-P2o Lpo-Mir-193-P2r Mal-Mir-193-P2b2 Mdo-Mir-193-P2a Mml-Mir-193-P2a Mml-Mir-193-P2b Mmu-Mir-193-P2a Mmu-Mir-193-P2b Mun-Mir-193-P2a Mun-Mir-193-P2b Oan-Mir-193-P2a Oan-Mir-193-P2b Ocu-Mir-193-P2a Ocu-Mir-193-P2b Pbv-Mir-193-P2a Pbv-Mir-193-P2b Pfl-Mir-193-P2 Pma-Mir-193-P2 Pmi-Mir-193-P2 Rno-Mir-193-P2a Rno-Mir-193-P2b Sha-Mir-193-P2a Sha-Mir-193-P2b Sko-Mir-193-P2 Spt-Mir-193-P2a Spt-Mir-193-P2b Spu-Mir-193-P2 Sto-Mir-193-P2a Sto-Mir-193-P2b Tca-Mir-193-P2 Tgu-Mir-193-P2a Tgu-Mir-193-P2b Tni-Mir-193-P2b2 Xbo-Mir-193-P2 Xla-Mir-193-P2a3 Xla-Mir-193-P2a4 Xtr-Mir-193-P2a

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(CB4)

X: 13610830-13610891 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-193-P2-v2)

Mir-193-P1-v1 X: 13610718-13610779 [+] Ensembl
Mir-193-P1-v2 X: 13610718-13610779 [+] Ensembl
Mir-193-P2-v1 X: 13610830-13610891 [+] Ensembl
Mir-193-P2-v2 X: 13610830-13610891 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

GUGAGAGUAAGUUUAGGGACCCUUCCCAACAAAAUCUCAAAUAGUGGCAUUUACACAAGCAAUGGUAUGUAAUGCCCUGUACGAGAUUUGGUUGGUGAGAAGUCUCUACAAUAGGUAUCAUU

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Structure

        10         20         30        40        50        60 
GUGAGAGUAAGUUUAGG-   C-| UC     A       AA    U      U  ACAAGC 
                  GAC  CU  CCAAC AAAUCUC  AUAG GGCAUU AC      A
                  CUG  GA  GGUUG UUUAGAG  UGUC CCGUAA UG      A
UUACUAUGGAUAACAUCU   AA^ GU     G       CA    -      -  UAUGGU 
120       110       100        90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

01	02	03	04	05	06	07	08	09	10	11	12	13	14	15	16	Cb	Ea	Ma	Yo

Star sequence

Cbr-Mir-193-P2-v2_5p*

mirBase accession

None

Sequence

0- AAAAUCUCAAAUAGUGGCAUUUAC -24

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Mature sequence

Cbr-Mir-193-P2-v2_3p

mirBase accession

MIMAT0004287

Sequence

40- AAUGCCCUGUACGAGAUUUGGU -62

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