Mir-193-P1h2

MirGeneDB ID

Bla-Mir-193-P1h2

Family name

Species

European lancelet (Branchiostoma lanceolatum)

MiRBase ID

Paralogues

Bla-Mir-193-P1e Bla-Mir-193-P1f1 Bla-Mir-193-P1f2 Bla-Mir-193-P1g1 Bla-Mir-193-P1g2 Bla-Mir-193-P1h1 Bla-Mir-193-P1i1 Bla-Mir-193-P1i2 Bla-Mir-193-P1j1 Bla-Mir-193-P1j2 Bla-Mir-193-P1k

Orthologues

Aae-Mir-193-P1 Aga-Mir-193-P1 Bge-Mir-193-P1 Cbr-Mir-193-P1-v1 Cel-Mir-193-P1-v1 Cte-Mir-193-P1 Dan-Mir-193-P1-v1 Dgr-Mir-193-P1 Dlo-Mir-193-P1 Dma-Mir-193-P1 Dme-Mir-193-P1-v1 Dmo-Mir-193-P1-v1 Dpu-Mir-193-P1 Dsi-Mir-193-P1-v1 Dya-Mir-193-P1-v1 Eba-Mir-193-P1 Esc-Mir-193-P1 Gpa-Mir-193-P1 Hme-Mir-193-P1 Hru-Mir-193-P1 Isc-Mir-193-P1 Lgi-Mir-193-P1 Lhy-Mir-193-P1 Mgi-Mir-193-P1 Mom-Mir-193-P1 Npo-Mir-193-P1 Obi-Mir-193-P1 Ofu-Mir-193-P1 Ovu-Mir-193-P1 Pau-Mir-193-P1 Pcr-Mir-193-P1 Pma-Mir-193-P1 Pmi-Mir-193-P1 Pve-Mir-193-P1 Rph-Mir-193-P1 Snu-Mir-193-P1 Tca-Mir-193-P1 War-Mir-193-P1 Xbo-Mir-193-P1

Node of Origin (locus)

B. lanceolatum

Node of Origin (family)

Bilateria

Genome context
(BraLan2)

Sc0000154: 662095-662152 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-193-P1h2)

Mir-193-P1f2 Sc0000154: 654308-654366 [+] Ensembl
Mir-193-P1g1 Sc0000154: 656679-656740 [+] Ensembl
Mir-193-P1h1 Sc0000154: 657045-657102 [+] Ensembl
Mir-193-P1i2 Sc0000154: 658145-658203 [+] Ensembl
Mir-193-P1j1 Sc0000154: 658502-658559 [+] Ensembl
Mir-193-P1f1 Sc0000154: 659346-659404 [+] Ensembl
Mir-193-P1g2 Sc0000154: 661730-661788 [+] Ensembl
Mir-193-P1h2 Sc0000154: 662095-662152 [+] Ensembl
Mir-193-P1i1 Sc0000154: 663231-663289 [+] Ensembl
Mir-193-P1j2 Sc0000154: 663582-663639 [+] Ensembl
Mir-193-P1k Sc0000154: 665556-665614 [+] Ensembl

Seed

ACUGGCC

Precursor
(pre-Mir +30nt flank)

UAGAUUUUCACACCCUCCUUGUUGUCCAUCCGGGAUAUAGAGGUGCAGUCGGCGUUUUAACUAUCCCACUGGCCCUCUACGUCUUGGAUGGCGUGCAAAAUGAUUCCGCCAUUAUUCC

Get precursor sequence

Structure

        10          20        30        40        50        
UAGAUUUUCACACCCUCC--|   UGU          UA      UG    C  CGUUU 
                    UUGU   CCAUCCGGGA  UAGAGG  CAGU GG     U
                    AACG   GGUAGGUUCU  AUCUCC  GUCA CC     A
CCUUAUUACCGCCUUAGUAA^   UGC          GC      CG    C  UAUCA 
      110       100        90        80        70        60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Ad	Em	Em	Em	Em

Star sequence

Bla-Mir-193-P1h2_5p*

mirBase accession

None

Sequence

0- CGGGAUAUAGAGGUGCAGUCGG -22

Get sequence

Mature sequence

Bla-Mir-193-P1h2_3p

mirBase accession

None

Sequence

36- CACUGGCCCUCUACGUCUUGGA -58

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