MirGeneDB 2.1
MirGeneDB ID

Bfl-Mir-8-P1-v1

Family name MIR-8 (all species)
Seed AAUACUG
Species Florida lancelet (Branchiostoma floridae)
MiRBase ID bfl-mir-200a
Paralogues Bfl-Mir-8-P1-v2  Bfl-Mir-8-P2  Bfl-Mir-8-P3 
Orthologues Aae-Mir-8  Aca-Mir-8-P1a  Ami-Mir-8-P1a  Asu-Mir-8  Bge-Mir-8  Bla-Mir-8-P1  Bpl-Mir-8  Bta-Mir-8-P1a  Bta-Mir-8-P1b  Cbr-Mir-8  Cel-Mir-8  Cfa-Mir-8-P1a  Cfa-Mir-8-P1b  Cgi-Mir-8  Cin-Mir-8-P1  Cli-Mir-8-P1a  Cmi-Mir-8-P1a  Cpi-Mir-8-P1a  Cpo-Mir-8-P1a  Cpo-Mir-8-P1b  Csc-Mir-8  Cte-Mir-8  Dan-Mir-8  Dma-Mir-8  Dme-Mir-8  Dmo-Mir-8  Dno-Mir-8-P1a  Dpu-Mir-8  Dre-Mir-8-P1a  Dre-Mir-8-P1b  Dsi-Mir-8  Dya-Mir-8  Ebu-Mir-8-P1o1  Esc-Mir-8  Ete-Mir-8-P1a  Ete-Mir-8-P1b  Gga-Mir-8-P1a  Gja-Mir-8-P1a  Gmo-Mir-8-P1a  Hme-Mir-8  Hsa-Mir-8-P1a  Hsa-Mir-8-P1b  Isc-Mir-8  Lan-Mir-8  Lch-Mir-8-P1a  Lch-Mir-8-P1b  Lgi-Mir-8  Loc-Mir-8-P1a  Mal-Mir-8-P1a  Mdo-Mir-8-P1a  Mdo-Mir-8-P1b  Mml-Mir-8-P1a  Mml-Mir-8-P1b  Mmu-Mir-8-P1a  Mmu-Mir-8-P1b  Mun-Mir-8-P1a  Npo-Mir-8  Oan-Mir-8-P1a  Oan-Mir-8-P1b  Obi-Mir-8  Ocu-Mir-8-P1a  Ocu-Mir-8-P1b  Ovu-Mir-8  Pbv-Mir-8-P1a  Pfl-Mir-8  Pma-Mir-8-P1o2  Pmi-Mir-8  Rno-Mir-8-P1a  Rno-Mir-8-P1b  Sha-Mir-8-P1a  Sha-Mir-8-P1b  Sko-Mir-8  Spt-Mir-8-P1a  Spu-Mir-8  Sto-Mir-8-P1a  Tca-Mir-8  Tgu-Mir-8-P1a  Tni-Mir-8-P1a  Xla-Mir-8-P1a1  Xla-Mir-8-P1a2  Xtr-Mir-8-P1a 
Node of Origin (locus) Chordata
Node of Origin (family) Bilateria
Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic)		 NC_049992.1: 3180219-3180276 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-8-P1-v1)		 Mir-8-P3 NC_049992.1: 3174683-3174743 [-] UCSC
Mir-8-P2 NC_049992.1: 3177478-3177535 [-] UCSC
Mir-8-P1-v1 NC_049992.1: 3180219-3180276 [-] UCSC
Mir-8-P1-v2 NC_049992.1: 3180219-3180276 [-] UCSC
Precursor
(pre-Mir +30nt flank)
ACAGAAGGACAUGUUAGCUUGAUUCCUGACAUCUUACUUGGCAGCAUUCGAUGUGUUUCCAUAUUCAAAUACUGCCUGGUAAUGAUGCCAGUCAAGUUUCCUCACAGUCCACAAUUGU
Get precursor sequence
Structure
        10             20        30         40        50        
ACAGAAGGACAUGUUAG-----|    UUC   A    -     U     C   C  UGUGUU 
                      CUUGA   CUG CAUC UUACU GGCAG AUU GA      \
                      GAACU   GAC GUAG AAUGG CCGUC UAA CU      U
UGUUAACACCUGACACUCCUUU^    ---   C    U     U     A   A  UAUACC 
      110       100           90        80        70        60
Deep sequencing
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3' NTU Yes
MotifsUGUG in loop
Tissue expression
-   +
To
Star sequence

Bfl-Mir-8-P1-v1_5p* (predicted)
mirBase accessionNone
Sequence 
0- AUCUUACUUGGCAGCAUUCGA -21
Get sequence
Mature sequence

Bfl-Mir-8-P1-v1_3p
mirBase accessionMIMAT0009491
Sequence 
36- AAAUACUGCCUGGUAAUGAUGC -58
Get sequence