MirGeneDB ID | Lch-Mir-8-P1a |
---|---|
Family name | MIR-8 (all species) |
Seed | AAUACUG |
Species | Coelacanth (Latimeria chalumnae) |
MiRBase ID | |
Paralogues | Lch-Mir-8-P1b Lch-Mir-8-P2a Lch-Mir-8-P3a |
Orthologues | Aae-Mir-8 Aca-Mir-8-P1a Ami-Mir-8-P1a Asu-Mir-8 Bfl-Mir-8-P1-v1 Bfl-Mir-8-P1-v2 Bge-Mir-8 Bla-Mir-8-P1 Bpl-Mir-8 Bta-Mir-8-P1a Cbr-Mir-8 Cel-Mir-8 Cfa-Mir-8-P1a Cgi-Mir-8 Cin-Mir-8-P1 Cli-Mir-8-P1a Cmi-Mir-8-P1a Cpi-Mir-8-P1a Cpo-Mir-8-P1a Csc-Mir-8 Cte-Mir-8 Dan-Mir-8 Dma-Mir-8 Dme-Mir-8 Dmo-Mir-8 Dno-Mir-8-P1a Dpu-Mir-8 Dre-Mir-8-P1a Dsi-Mir-8 Dya-Mir-8 Esc-Mir-8 Ete-Mir-8-P1a Gga-Mir-8-P1a Gja-Mir-8-P1a Gmo-Mir-8-P1a Hme-Mir-8 Hsa-Mir-8-P1a Isc-Mir-8 Lan-Mir-8 Lgi-Mir-8 Loc-Mir-8-P1a Mal-Mir-8-P1a Mdo-Mir-8-P1a Mml-Mir-8-P1a Mmu-Mir-8-P1a Mun-Mir-8-P1a Npo-Mir-8 Oan-Mir-8-P1a Obi-Mir-8 Ocu-Mir-8-P1a Ovu-Mir-8 Pbv-Mir-8-P1a Pfl-Mir-8 Pmi-Mir-8 Rno-Mir-8-P1a Sha-Mir-8-P1a Sko-Mir-8 Spt-Mir-8-P1a Spu-Mir-8 Sto-Mir-8-P1a Tca-Mir-8 Tgu-Mir-8-P1a Tni-Mir-8-P1a Xla-Mir-8-P1a1 Xla-Mir-8-P1a2 Xtr-Mir-8-P1a |
Node of Origin (locus) | Vertebrata |
Node of Origin (family) | Bilateria |
Genome context (LatCha1_add) |
JH126562.1: 3546942-3547001 [+] Ensembl |
Precursor (pre-Mir +30nt flank) | UCAUCACAAAGAAUUCUGGGAUGUUAUUGCCAUCUUACUGGGCAGCAUUGGAUGUACUCUGAUUUUCUAAUACUGCCUGGUAAUGAUGAUGAUGGUAUCCUGCAUUCAUCAUAGAAGAUUGet precursor sequence |
Structure | 10 20 30 40 50 UCAUCACAAAGAAUUCU-- UU GC -| UG C UGUACU GGGAUG AUU CAUC UUAC GGCAG AUUGGA \ UCCUAU UAG GUAG AAUG CCGUC UAAUCU C UUAGAAGAUACUACUUACG GG UA U^ GU A UUUAGU . 110 100 90 80 70 60 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
Star sequence | Lch-Mir-8-P1a_5p* (predicted) |
mirBase accession | None |
Sequence |
0- CAUCUUACUGGGCAGCAUUGGA -22
Get sequence
|
Mature sequence | Lch-Mir-8-P1a_3p (predicted) |
mirBase accession | None |
Sequence |
37- UAAUACUGCCUGGUAAUGAUGAU -60
Get sequence
|