MirGeneDB 3.0
MirGeneDB ID

Lch-Mir-8-P1a

Family name MIR-8 (all species)
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Mir-8-P1b  Lch-Mir-8-P2a  Lch-Mir-8-P3a 
Orthologues Aae-Mir-8  Aca-Mir-8-P1a  Aga-Mir-8  Agr-Mir-8  Ami-Mir-8-P1a  Asu-Mir-8  Bfl-Mir-8-P1-v1  Bge-Mir-8  Bko-Mir-8  Bla-Mir-8-P1  Bpl-Mir-8  Bta-Mir-8-P1a  Cbr-Mir-8  Cel-Mir-8  Cfa-Mir-8-P1a  Cin-Mir-8-P1  Cja-Mir-8-P1a  Cli-Mir-8-P1a  Cmi-Mir-8-P1a  Cpi-Mir-8-P1a  Cpo-Mir-8-P1a  Csc-Mir-8  Cte-Mir-8  Dan-Mir-8  Dgr-Mir-8  Dlo-Mir-8  Dma-Mir-8  Dme-Mir-8  Dmo-Mir-8  Dno-Mir-8-P1a  Dpu-Mir-8  Dre-Mir-8-P1a  Dsi-Mir-8  Dya-Mir-8  Eba-Mir-8  Eca-Mir-8-P1a  Eca-Mir-8-P1a-as  Egr-Mir-8  Esc-Mir-8  Ete-Mir-8-P1a  Gga-Mir-8-P1a  Gja-Mir-8-P1a  Gmo-Mir-8-P1a  Gpa-Mir-8  Gsa-Mir-8  Hme-Mir-8  Hru-Mir-8  Hsa-Mir-8-P1a  Isc-Mir-8  Laf-Mir-8-P1a  Lan-Mir-8  Lgi-Mir-8  Lhy-Mir-8  Llo-Mir-8  Loc-Mir-8-P1a  Mal-Mir-8-P1a  Mdo-Mir-8-P1a  Mgi-Mir-8  Mml-Mir-8-P1a  Mmr-Mir-8-P1a  Mmu-Mir-8-P1a  Mom-Mir-8  Mun-Mir-8-P1a  Neu-Mir-8-P1a  Npo-Mir-8  Oan-Mir-8-P1a  Obi-Mir-8  Ocu-Mir-8-P1a  Ofu-Mir-8  Ovu-Mir-8  Pab-Mir-8-P1a  Pau-Mir-8  Pbv-Mir-8-P1a  Pca-Mir-8  Pdu-Mir-8  Pfl-Mir-8  Pmi-Mir-8  Pve-Mir-8  Rno-Mir-8-P1a  Rph-Mir-8  Sha-Mir-8-P1a  Sko-Mir-8  Sma-Mir-8  Snu-Mir-8  Spt-Mir-8-P1a  Spu-Mir-8  Sto-Mir-8-P1a  Tca-Mir-8  Tgu-Mir-8-P1a  Tni-Mir-8-P1a  Tur-Mir-8  War-Mir-8  Xla-Mir-8-P1a1  Xla-Mir-8-P1a2  Xtr-Mir-8-P1a 
Node of Origin (locus) Vertebrata
Node of Origin (family) Nephrozoa
Genome context
(LatCha1_add)		 JH126562.1: 3546942-3547001 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-8-P1a)		 Mir-8-P1a JH126562.1: 3546942-3547001 [+] Ensembl
Mir-8-P2a JH126562.1: 3548600-3548660 [+] Ensembl
Mir-8-P3a JH126562.1: 3561179-3561237 [+] Ensembl
Seed AAUACUG
Precursor
(pre-Mir +30nt flank)		 
UCAUCACAAAGAAUUCUGGGAUGUUAUUGCCAUCUUACUGGGCAGCAUUGGAUGUACUCUGAUUUUCUAAUACUGCCUGGUAAUGAUGAUGAUGGUAUCCUGCAUUCAUCAUAGAAGAUU
Get precursor sequence
Structure
        10          20        30         40        50         
UCAUCACAAAGAAUUCU--      UU   GC    -|   UG     C      UGUACU 
                   GGGAUG  AUU  CAUC UUAC  GGCAG AUUGGA      \
                   UCCUAU  UAG  GUAG AAUG  CCGUC UAAUCU      C
UUAGAAGAUACUACUUACG      GG   UA    U^   GU     A      UUUAGU 
.       110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Star sequence

Lch-Mir-8-P1a_5p* (predicted)
mirBase accessionNone
Sequence 
0- CAUCUUACUGGGCAGCAUUGGA -22
Get sequence
Mature sequence

Lch-Mir-8-P1a_3p (predicted)
mirBase accessionNone
Sequence 
37- UAAUACUGCCUGGUAAUGAUGAU -60
Get sequence