MirGeneDB ID | Lch-Mir-8-P2a |
---|---|
Family name | MIR-8 (all species) |
Seed | AACACUG |
Species | Coelacanth (Latimeria chalumnae) |
MiRBase ID | |
Paralogues | Lch-Mir-8-P1a Lch-Mir-8-P1b Lch-Mir-8-P3a |
Orthologues | Aae-Mir-8 Aca-Mir-8-P2a Ami-Mir-8-P2a Asu-Mir-8 Bfl-Mir-8-P2 Bge-Mir-8 Bla-Mir-8-P2 Bpl-Mir-8 Bta-Mir-8-P2a Cbr-Mir-8 Cel-Mir-8 Cfa-Mir-8-P2a Cgi-Mir-8 Cin-Mir-8-P2 Cli-Mir-8-P2a Cmi-Mir-8-P2a Cpi-Mir-8-P2a Cpo-Mir-8-P2a Csc-Mir-8 Cte-Mir-8 Dan-Mir-8 Dma-Mir-8 Dme-Mir-8 Dmo-Mir-8 Dno-Mir-8-P2a Dpu-Mir-8 Dre-Mir-8-P2a Dsi-Mir-8 Dya-Mir-8 Esc-Mir-8 Ete-Mir-8-P2a Gga-Mir-8-P2a Gja-Mir-8-P2a Gmo-Mir-8-P2a Hme-Mir-8 Hsa-Mir-8-P2a Isc-Mir-8 Lan-Mir-8 Lgi-Mir-8 Loc-Mir-8-P2a Mal-Mir-8-P2a Mdo-Mir-8-P2a Mml-Mir-8-P2a Mmu-Mir-8-P2a Mun-Mir-8-P2a Npo-Mir-8 Oan-Mir-8-P2a Obi-Mir-8 Ocu-Mir-8-P2a Ovu-Mir-8 Pbv-Mir-8-P2a Pfl-Mir-8 Pmi-Mir-8 Rno-Mir-8-P2a Sha-Mir-8-P2a Sko-Mir-8 Spt-Mir-8-P2a Spu-Mir-8 Sto-Mir-8-P2a Tca-Mir-8 Tgu-Mir-8-P2a Tni-Mir-8-P2a Xla-Mir-8-P2a1 Xla-Mir-8-P2a2 Xtr-Mir-8-P2a |
Node of Origin (locus) | Vertebrata |
Node of Origin (family) | Bilateria |
Genome context (LatCha1_add) |
JH126562.1: 3548600-3548660 [+] Ensembl |
Precursor (pre-Mir +30nt flank) | UUGAUGGGAGAGACUUUGGUCCUCUAUGAGCAUCUUACUAGACAGUGCUGGAUUUUACUAAUCUUCUCUAACACUGUCUGGUAACGAUGUUUAAAGGGGUGAACCAAGCUACUGCAUUCCUGet precursor sequence |
Structure | 10 20 30 40 50 UUGAUGGGAGAGACUUUGGU-- A -| C UUUUAC CCUCU UGAGCAUC UUACUAGACAGUG UGGA U GGGGA AUUUGUAG AAUGGUCUGUCAC AUCU A UCCUUACGUCAUCGAACCAAGU A C^ A CUUCUA . 110 100 90 80 70 60 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Star sequence | Lch-Mir-8-P2a_5p* (predicted) |
mirBase accession | None |
Sequence |
0- CAUCUUACUAGACAGUGCUGGA -22
Get sequence
|
Mature sequence | Lch-Mir-8-P2a_3p (predicted) |
mirBase accession | None |
Sequence |
38- UAACACUGUCUGGUAACGAUGUU -61
Get sequence
|