MirGeneDB 3.0
MirGeneDB ID

Eca-Mir-8-P2a-as

Family name MIR-8 (all species)
Species Horse (Equus caballus)
MiRBase ID eca-mir-200a
Paralogues Eca-Mir-8-P1a  Eca-Mir-8-P1a-as  Eca-Mir-8-P1b  Eca-Mir-8-P2a  Eca-Mir-8-P2b  Eca-Mir-8-P3a 
Orthologues Aae-Mir-8  Aca-Mir-8-P2a  Aga-Mir-8  Agr-Mir-8  Ami-Mir-8-P2a  Asu-Mir-8  Bfl-Mir-8-P2  Bge-Mir-8  Bko-Mir-8  Bla-Mir-8-P2  Bpl-Mir-8  Bta-Mir-8-P2a  Cbr-Mir-8  Cel-Mir-8  Cfa-Mir-8-P2a  Cin-Mir-8-P2  Cja-Mir-8-P2a  Cli-Mir-8-P2a  Cmi-Mir-8-P2a  Cpi-Mir-8-P2a  Cpo-Mir-8-P2a  Csc-Mir-8  Cte-Mir-8  Dan-Mir-8  Dgr-Mir-8  Dlo-Mir-8  Dma-Mir-8  Dme-Mir-8  Dmo-Mir-8  Dno-Mir-8-P2a  Dpu-Mir-8  Dre-Mir-8-P2a  Dsi-Mir-8  Dya-Mir-8  Eba-Mir-8  Egr-Mir-8  Esc-Mir-8  Ete-Mir-8-P2a  Gga-Mir-8-P2a  Gja-Mir-8-P2a  Gmo-Mir-8-P2a  Gpa-Mir-8  Gsa-Mir-8  Hme-Mir-8  Hru-Mir-8  Hsa-Mir-8-P2a  Isc-Mir-8  Laf-Mir-8-P2a  Lan-Mir-8  Lch-Mir-8-P2a  Lgi-Mir-8  Lhy-Mir-8  Llo-Mir-8  Loc-Mir-8-P2a  Mal-Mir-8-P2a  Mdo-Mir-8-P2a  Mgi-Mir-8  Mml-Mir-8-P2a  Mmr-Mir-8-P2a  Mmu-Mir-8-P2a  Mom-Mir-8  Mun-Mir-8-P2a  Neu-Mir-8-P2a  Npo-Mir-8  Oan-Mir-8-P2a  Obi-Mir-8  Ocu-Mir-8-P2a  Ofu-Mir-8  Ovu-Mir-8  Pab-Mir-8-P2a  Pau-Mir-8  Pbv-Mir-8-P2a  Pca-Mir-8  Pdu-Mir-8  Pfl-Mir-8  Pmi-Mir-8  Pve-Mir-8  Rno-Mir-8-P2a  Rph-Mir-8  Sha-Mir-8-P2a  Sko-Mir-8  Sma-Mir-8  Snu-Mir-8  Spt-Mir-8-P2a  Spu-Mir-8  Sto-Mir-8-P2a  Tca-Mir-8  Tgu-Mir-8-P2a  Tni-Mir-8-P2a  Tur-Mir-8  War-Mir-8  Xla-Mir-8-P2a1  Xla-Mir-8-P2a2  Xtr-Mir-8-P2a 
Node of Origin (locus) E. caballus
Node of Origin (family) Nephrozoa
Genome context
(GCA_002863925.1_EquCab3.0)		 CM009149.1: 48713818-48713878 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-8-P2a-as)		 Mir-8-P3a CM009149.1: 48712427-48712485 [-] UCSC Ensembl
Mir-8-P2a CM009149.1: 48713816-48713876 [-] UCSC Ensembl
Mir-8-P2a-as CM009149.1: 48713818-48713878 [+] UCSC Ensembl
Mir-8-P1a CM009149.1: 48714471-48714528 [-] UCSC Ensembl
Mir-8-P1a-as CM009149.1: 48714474-48714529 [+] UCSC Ensembl
Seed AUCGUUA
Precursor
(pre-Mir +30nt flank)		 
CCCAGCGGGCGGCAGUGGGUCACCUUUGAACAUCGUUACCAGACAGUGUUAGAGUCGAGCCGAGAAAUCCAGCACUGUCCGGUAAGAUGCCCACAGGGGCCCAGGCGCCUCAGCCUGAGGA
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Structure
        10           20        30        40        50        60
CCCAGCGGGCGGCAGUG---|   A   U  AA    G     A         A  GUCGAG 
                    GGUC CCU UG  CAUC UUACC GACAGUGUU GA      C
                    CCGG GGA AC  GUAG AAUGG CUGUCACGA CU      C
AGGAGUCCGACUCCGCGGAC^   -   C  CC    -     C         C  AAAGAG 
 .       110       100         90         80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Mature sequence

Eca-Mir-8-P2a-as_5p
mirBase accessionNone
Sequence 
0- CAUCGUUACCAGACAGUGUUAGA -23
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Co-mature sequence

Eca-Mir-8-P2a-as_3p
mirBase accessionMIMAT0012909
Sequence 
39- CAGCACUGUCCGGUAAGAUGCC -61
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