MirGeneDB 3.0
MirGeneDB ID

Ocu-Mir-8-P2a

Family name MIR-8 (all species)
Species Rabbit (Oryctolagus cuniculus)
MiRBase ID
Paralogues Ocu-Mir-8-P1a  Ocu-Mir-8-P1b  Ocu-Mir-8-P2b  Ocu-Mir-8-P3a 
Orthologues Aae-Mir-8  Aca-Mir-8-P2a  Aga-Mir-8  Agr-Mir-8  Ami-Mir-8-P2a  Asu-Mir-8  Bfl-Mir-8-P2  Bge-Mir-8  Bko-Mir-8  Bla-Mir-8-P2  Bpl-Mir-8  Bta-Mir-8-P2a  Cbr-Mir-8  Cel-Mir-8  Cfa-Mir-8-P2a  Cin-Mir-8-P2  Cja-Mir-8-P2a  Cli-Mir-8-P2a  Cmi-Mir-8-P2a  Cpi-Mir-8-P2a  Cpo-Mir-8-P2a  Csc-Mir-8  Cte-Mir-8  Dan-Mir-8  Dgr-Mir-8  Dlo-Mir-8  Dma-Mir-8  Dme-Mir-8  Dmo-Mir-8  Dno-Mir-8-P2a  Dpu-Mir-8  Dre-Mir-8-P2a  Dsi-Mir-8  Dya-Mir-8  Eba-Mir-8  Eca-Mir-8-P2a  Eca-Mir-8-P2a-as  Egr-Mir-8  Esc-Mir-8  Ete-Mir-8-P2a  Gga-Mir-8-P2a  Gja-Mir-8-P2a  Gmo-Mir-8-P2a  Gpa-Mir-8  Gsa-Mir-8  Hme-Mir-8  Hru-Mir-8  Hsa-Mir-8-P2a  Isc-Mir-8  Laf-Mir-8-P2a  Lan-Mir-8  Lch-Mir-8-P2a  Lgi-Mir-8  Lhy-Mir-8  Llo-Mir-8  Loc-Mir-8-P2a  Mal-Mir-8-P2a  Mdo-Mir-8-P2a  Mgi-Mir-8  Mml-Mir-8-P2a  Mmr-Mir-8-P2a  Mmu-Mir-8-P2a  Mom-Mir-8  Mun-Mir-8-P2a  Neu-Mir-8-P2a  Npo-Mir-8  Oan-Mir-8-P2a  Obi-Mir-8  Ofu-Mir-8  Ovu-Mir-8  Pab-Mir-8-P2a  Pau-Mir-8  Pbv-Mir-8-P2a  Pca-Mir-8  Pdu-Mir-8  Pfl-Mir-8  Pmi-Mir-8  Pve-Mir-8  Rno-Mir-8-P2a  Rph-Mir-8  Sha-Mir-8-P2a  Sko-Mir-8  Sma-Mir-8  Snu-Mir-8  Spt-Mir-8-P2a  Spu-Mir-8  Sto-Mir-8-P2a  Tca-Mir-8  Tgu-Mir-8-P2a  Tni-Mir-8-P2a  Tur-Mir-8  War-Mir-8  Xla-Mir-8-P2a1  Xla-Mir-8-P2a2  Xtr-Mir-8-P2a 
Node of Origin (locus) Vertebrata
Node of Origin (family) Nephrozoa
Genome context
(oryCun2_add)		 639058788: 590-649 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-8-P2a)		 Mir-8-P1a 639058788: 140-198 [+] UCSC Ensembl
Mir-8-P2a 639058788: 590-649 [+] UCSC Ensembl
Seed AACACUG
Precursor
(pre-Mir +30nt flank)		 
CUGCCUGGCCUGCCCUCGGGCCUCUGUGGGCAUCUUACUGGACAGUGCUGGAUUCUCGGCAUGGCUCUAACACUGUCUGGUAACGAUGCUCACCGCUGUCCCACGCUCAUCGGCGCCAUC
Get precursor sequence
Structure
        10          20        30         40        50         
CUGCCUGGCCUGCCCUC--    CUCU         -|   UG       C    UUCUCG 
                   GGGC    GUGGGCAUC UUAC  GACAGUG UGGA      \
                   CCUG    CACUCGUAG AAUG  CUGUCAC AUCU      G
CUACCGCGGCUACUCGCAC    UCGC         C^   GU       A    CGGUAC 
.       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
CommentNot in assembly but in trace archive.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
He Ki Te To Wh
Star sequence

Ocu-Mir-8-P2a_5p*
mirBase accessionNone
Sequence 
0- CAUCUUACUGGACAGUGCUGGA -22
Get sequence
Mature sequence

Ocu-Mir-8-P2a_3p
mirBase accessionNone
Sequence 
37- UAACACUGUCUGGUAACGAUGCU -60
Get sequence