Mir-8-P2a

MirGeneDB ID

Mml-Mir-8-P2a

Family name

MIR-8 (all species)

Species

Rhesus monkey (Macaca mulatta)

MiRBase ID

mml-mir-200a

Paralogues

Mml-Mir-8-P1a Mml-Mir-8-P1b Mml-Mir-8-P2b Mml-Mir-8-P3a

Orthologues

Aae-Mir-8 Aca-Mir-8-P2a Aga-Mir-8 Agr-Mir-8 Ami-Mir-8-P2a Asu-Mir-8 Bfl-Mir-8-P2 Bge-Mir-8 Bko-Mir-8 Bla-Mir-8-P2 Bpl-Mir-8 Bta-Mir-8-P2a Cbr-Mir-8 Cel-Mir-8 Cfa-Mir-8-P2a Cin-Mir-8-P2 Cja-Mir-8-P2a Cli-Mir-8-P2a Cmi-Mir-8-P2a Cpi-Mir-8-P2a Cpo-Mir-8-P2a Csc-Mir-8 Cte-Mir-8 Dan-Mir-8 Dgr-Mir-8 Dlo-Mir-8 Dma-Mir-8 Dme-Mir-8 Dmo-Mir-8 Dno-Mir-8-P2a Dpu-Mir-8 Dre-Mir-8-P2a Dsi-Mir-8 Dya-Mir-8 Eba-Mir-8 Eca-Mir-8-P2a Eca-Mir-8-P2a-as Egr-Mir-8 Esc-Mir-8 Ete-Mir-8-P2a Gga-Mir-8-P2a Gja-Mir-8-P2a Gmo-Mir-8-P2a Gpa-Mir-8 Gsa-Mir-8 Hme-Mir-8 Hru-Mir-8 Hsa-Mir-8-P2a Isc-Mir-8 Laf-Mir-8-P2a Lan-Mir-8 Lch-Mir-8-P2a Lgi-Mir-8 Lhy-Mir-8 Llo-Mir-8 Loc-Mir-8-P2a Mal-Mir-8-P2a Mdo-Mir-8-P2a Mgi-Mir-8 Mmr-Mir-8-P2a Mmu-Mir-8-P2a Mom-Mir-8 Mun-Mir-8-P2a Neu-Mir-8-P2a Npo-Mir-8 Oan-Mir-8-P2a Obi-Mir-8 Ocu-Mir-8-P2a Ofu-Mir-8 Ovu-Mir-8 Pab-Mir-8-P2a Pau-Mir-8 Pbv-Mir-8-P2a Pca-Mir-8 Pdu-Mir-8 Pfl-Mir-8 Pmi-Mir-8 Pve-Mir-8 Rno-Mir-8-P2a Rph-Mir-8 Sha-Mir-8-P2a Sko-Mir-8 Sma-Mir-8 Snu-Mir-8 Spt-Mir-8-P2a Spu-Mir-8 Sto-Mir-8-P2a Tca-Mir-8 Tgu-Mir-8-P2a Tni-Mir-8-P2a Tur-Mir-8 War-Mir-8 Xla-Mir-8-P2a1 Xla-Mir-8-P2a2 Xtr-Mir-8-P2a

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Nephrozoa

Genome context
(GCA_003339765.3_Mmul_10_traces)

CM014336.1: 223252516-223252576 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-8-P2a)

Mir-8-P3a CM014336.1: 223251449-223251505 [-] UCSC Ensembl
Mir-8-P2a CM014336.1: 223252516-223252576 [-] UCSC Ensembl
Mir-8-P1a CM014336.1: 223253283-223253341 [-] UCSC Ensembl

Seed

AACACUG

Precursor
(pre-Mir +30nt flank)

GAUCCCAUGUCCCUCCCGGGCCCCUGUGAGCAUCUUACCGGACAGUGCUGGAUUUCCCAGCUUGACUCUAACACUGUCUGGUAACGAUGUUCAAAGGUGACCCACCGCUCGCCGGAGACCC

Get precursor sequence

Structure

        10         20         30         40        50         
GAUCCCAUGUCCCUCCC-   CC-   G        -|            C    UUUCCC 
                  GGG   CCU UGAGCAUC UUACCGGACAGUG UGGA      A
                  CCC   GGA ACUUGUAG AAUGGUCUGUCAC AUCU      G
CCCAGAGGCCGCUCGCCA   AGU   A        C^            A    CAGUUC 
 .       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Bo	Br	Br	Br	He	Ki	Li	Lu	Ly	Sk	Sp	Te	Th

Star sequence

Mml-Mir-8-P2a_5p*

mirBase accession

MIMAT0026842

Sequence

0- CAUCUUACCGGACAGUGCUGGA -22

Get sequence

Proposed targets

TargetScanVert: mml-miR-200a-5p

Mature sequence

Mml-Mir-8-P2a_3p

mirBase accession

MIMAT0006233

Sequence

38- UAACACUGUCUGGUAACGAUGUU -61

Get sequence

Proposed targets

TargetScanVert: mml-miR-200a-3p