MirGeneDB ID | Cfa-Mir-8-P2a |
Family name |
MIR-8 (all species) |
Species |
Dog (Canis familiaris) |
MiRBase ID |
cfa-mir-200a
|
Paralogues |
Cfa-Mir-8-P1a
Cfa-Mir-8-P1b
Cfa-Mir-8-P2b
Cfa-Mir-8-P3a
|
Orthologues |
Aae-Mir-8
Aca-Mir-8-P2a
Aga-Mir-8
Agr-Mir-8
Ami-Mir-8-P2a
Asu-Mir-8
Bfl-Mir-8-P2
Bge-Mir-8
Bko-Mir-8
Bla-Mir-8-P2
Bpl-Mir-8
Bta-Mir-8-P2a
Cbr-Mir-8
Cel-Mir-8
Cin-Mir-8-P2
Cja-Mir-8-P2a
Cli-Mir-8-P2a
Cmi-Mir-8-P2a
Cpi-Mir-8-P2a
Cpo-Mir-8-P2a
Csc-Mir-8
Cte-Mir-8
Dan-Mir-8
Dgr-Mir-8
Dlo-Mir-8
Dma-Mir-8
Dme-Mir-8
Dmo-Mir-8
Dno-Mir-8-P2a
Dpu-Mir-8
Dre-Mir-8-P2a
Dsi-Mir-8
Dya-Mir-8
Eba-Mir-8
Eca-Mir-8-P2a
Eca-Mir-8-P2a-as
Egr-Mir-8
Esc-Mir-8
Ete-Mir-8-P2a
Gga-Mir-8-P2a
Gja-Mir-8-P2a
Gmo-Mir-8-P2a
Gpa-Mir-8
Gsa-Mir-8
Hme-Mir-8
Hru-Mir-8
Hsa-Mir-8-P2a
Isc-Mir-8
Laf-Mir-8-P2a
Lan-Mir-8
Lch-Mir-8-P2a
Lgi-Mir-8
Lhy-Mir-8
Llo-Mir-8
Loc-Mir-8-P2a
Mal-Mir-8-P2a
Mdo-Mir-8-P2a
Mgi-Mir-8
Mml-Mir-8-P2a
Mmr-Mir-8-P2a
Mmu-Mir-8-P2a
Mom-Mir-8
Mun-Mir-8-P2a
Neu-Mir-8-P2a
Npo-Mir-8
Oan-Mir-8-P2a
Obi-Mir-8
Ocu-Mir-8-P2a
Ofu-Mir-8
Ovu-Mir-8
Pab-Mir-8-P2a
Pau-Mir-8
Pbv-Mir-8-P2a
Pca-Mir-8
Pdu-Mir-8
Pfl-Mir-8
Pmi-Mir-8
Pve-Mir-8
Rno-Mir-8-P2a
Rph-Mir-8
Sha-Mir-8-P2a
Sko-Mir-8
Sma-Mir-8
Snu-Mir-8
Spt-Mir-8-P2a
Spu-Mir-8
Sto-Mir-8-P2a
Tca-Mir-8
Tgu-Mir-8-P2a
Tni-Mir-8-P2a
Tur-Mir-8
War-Mir-8
Xla-Mir-8-P2a1
Xla-Mir-8-P2a2
Xtr-Mir-8-P2a
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Nephrozoa
|
Genome context (canFam3_add) |
chr5: 56369078-56369138 [+]
UCSC
Ensembl
|
Clustered miRNAs (< 50kb from Mir-8-P2a) |
Mir-8-P1a
chr5: 56368408-56368466 [+]
UCSC
Ensembl
Mir-8-P2a
chr5: 56369078-56369138 [+]
UCSC
Ensembl
Mir-8-P3a
chr5: 56370524-56370582 [+]
UCSC
Ensembl
|
Seed |
AACACUG |
Precursor (pre-Mir +30nt flank) |
CGGGCCGAGGCGCACCUGGGCCUCUGUGGGCAUCUUACCGGACAGUGCUGGAUUUCUUGGCUUGACUCUAACACUGUCUGGUAACGAUGUUCAAAGGUGACCCACUGCCUGCCCACCAGGA
Get precursor sequence
|
Structure | 10 20 30 40 50
CGGGCCGAGGCGCACCU- CC- G -| C UUUCUU
GGG UCU UGGGCAUC UUACCGGACAGUG UGGA G
CCC GGA ACUUGUAG AAUGGUCUGUCAC AUCU G
AGGACCACCCGUCCGUCA AGU A C^ A CAGUUC
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
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An |
An |
An |
Bl |
Ce |
Co |
He |
Hi |
Hi |
Hy |
Ki |
Ki |
Li |
Lu |
Ov |
Sk |
Te |
Te |
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Star sequence |
Cfa-Mir-8-P2a_5p* |
mirBase accession | MIMAT0009865 |
Sequence |
0- CAUCUUACCGGACAGUGCUGGA -22
Get sequence
|
Proposed targets |
TargetScanVert: cfa-miR-200a
miRDB: MIMAT0009865
|
Mature sequence |
Cfa-Mir-8-P2a_3p |
mirBase accession | None |
Sequence |
38- UAACACUGUCUGGUAACGAUGUU -61
Get sequence
|