MirGeneDB 3.0

MirGeneDB ID

Sma-Mir-8

Family name

MIR-8 (all species)

Species

Blood fluke (Schistosoma mansoni)

MiRBase ID

sma-mir-8

Paralogues

Orthologues

Aae-Mir-8 Aca-Mir-8-P1a Aca-Mir-8-P2a Aca-Mir-8-P3a Aga-Mir-8 Agr-Mir-8 Ami-Mir-8-P1a Ami-Mir-8-P2a Ami-Mir-8-P3a Asu-Mir-8 Ava-Mir-8-P16 Ava-Mir-8-P17 Bfl-Mir-8-P1-v1 Bfl-Mir-8-P2 Bfl-Mir-8-P3 Bge-Mir-8 Bko-Mir-8 Bla-Mir-8-P1 Bla-Mir-8-P2 Bla-Mir-8-P3 Bpl-Mir-8 Bta-Mir-8-P1a Bta-Mir-8-P1b Bta-Mir-8-P2a Bta-Mir-8-P2b Bta-Mir-8-P3a Cbr-Mir-8 Cel-Mir-8 Cfa-Mir-8-P1a Cfa-Mir-8-P1b Cfa-Mir-8-P2a Cfa-Mir-8-P2b Cfa-Mir-8-P3a Cin-Mir-8-P1 Cin-Mir-8-P2 Cja-Mir-8-P1a Cja-Mir-8-P1b Cja-Mir-8-P2a Cja-Mir-8-P2b Cja-Mir-8-P3a Cli-Mir-8-P1a Cli-Mir-8-P2a Cli-Mir-8-P3a Cmi-Mir-8-P1a Cmi-Mir-8-P2a Cmi-Mir-8-P3a Cpi-Mir-8-P1a Cpi-Mir-8-P2a Cpi-Mir-8-P3a Cpo-Mir-8-P1a Cpo-Mir-8-P1b Cpo-Mir-8-P2a Cpo-Mir-8-P2b Cpo-Mir-8-P3a Csc-Mir-8 Cte-Mir-8 Dan-Mir-8 Dgr-Mir-8 Dlo-Mir-8 Dma-Mir-8 Dme-Mir-8 Dmo-Mir-8 Dno-Mir-8-P1a Dno-Mir-8-P2a Dno-Mir-8-P2b Dno-Mir-8-P3a Dpu-Mir-8 Dre-Mir-8-P1a Dre-Mir-8-P1b Dre-Mir-8-P2a Dre-Mir-8-P2b Dre-Mir-8-P3a Dre-Mir-8-P3b Dsi-Mir-8 Dya-Mir-8 Eba-Mir-8 Ebu-Mir-8-P1o1 Ebu-Mir-8-P2o1 Ebu-Mir-8-P3o1 Eca-Mir-8-P1a Eca-Mir-8-P1a-as Eca-Mir-8-P1b Eca-Mir-8-P2a Eca-Mir-8-P2a-as Eca-Mir-8-P2b Eca-Mir-8-P3a Efe-Mir-8-P4 Efe-Mir-8-P5 Efe-Mir-8-P6 Egr-Mir-8 Esc-Mir-8 Ete-Mir-8-P1a Ete-Mir-8-P1b Ete-Mir-8-P2a Ete-Mir-8-P2b Ete-Mir-8-P3a Gga-Mir-8-P1a Gga-Mir-8-P2a Gga-Mir-8-P3a Gja-Mir-8-P1a Gja-Mir-8-P2a Gja-Mir-8-P3a Gmo-Mir-8-P1a Gmo-Mir-8-P2a Gmo-Mir-8-P3a Gpa-Mir-8 Gsa-Mir-8 Hme-Mir-8 Hru-Mir-8 Hsa-Mir-8-P1a Hsa-Mir-8-P1b Hsa-Mir-8-P2a Hsa-Mir-8-P2b Hsa-Mir-8-P3a Isc-Mir-8 Laf-Mir-8-P1a Laf-Mir-8-P1b Laf-Mir-8-P2a Laf-Mir-8-P2b Laf-Mir-8-P3a Lan-Mir-8 Lch-Mir-8-P1a Lch-Mir-8-P1b Lch-Mir-8-P2a Lch-Mir-8-P3a Lgi-Mir-8 Lhy-Mir-8 Llo-Mir-8 Loc-Mir-8-P1a Loc-Mir-8-P2a Loc-Mir-8-P3a Lpo-Mir-8-P7 Lpo-Mir-8-P8 Lpo-Mir-8-P9 Lpo-Mir-8-P10 Lpo-Mir-8-P11 Lpo-Mir-8-P12 Lpo-Mir-8-P13 Mal-Mir-8-P1a Mal-Mir-8-P2a Mal-Mir-8-P3a Mdo-Mir-8-P1a Mdo-Mir-8-P1b Mdo-Mir-8-P2a Mdo-Mir-8-P2b Mdo-Mir-8-P3a Mgi-Mir-8 Mml-Mir-8-P1a Mml-Mir-8-P1b Mml-Mir-8-P2a Mml-Mir-8-P2b Mml-Mir-8-P3a Mmr-Mir-8-P1a Mmr-Mir-8-P1b Mmr-Mir-8-P2a Mmr-Mir-8-P2b Mmr-Mir-8-P3a Mmu-Mir-8-P1a Mmu-Mir-8-P1b Mmu-Mir-8-P2a Mmu-Mir-8-P2b Mmu-Mir-8-P3a Mom-Mir-8 Mun-Mir-8-P1a Mun-Mir-8-P2a Mun-Mir-8-P3a Neu-Mir-8-P1a Neu-Mir-8-P1b Neu-Mir-8-P2a Neu-Mir-8-P3a Npo-Mir-8 Oan-Mir-8-P1a Oan-Mir-8-P1b Oan-Mir-8-P2a Oan-Mir-8-P2b Oan-Mir-8-P3a Obi-Mir-8 Ocu-Mir-8-P1a Ocu-Mir-8-P1b Ocu-Mir-8-P2a Ocu-Mir-8-P2b Ocu-Mir-8-P3a Ofu-Mir-8 Ovu-Mir-8 Pab-Mir-8-P1a Pab-Mir-8-P1b Pab-Mir-8-P2a Pab-Mir-8-P2b Pab-Mir-8-P3a Pau-Mir-8 Pbv-Mir-8-P1a Pbv-Mir-8-P2a Pbv-Mir-8-P3a Pca-Mir-8 Pcr-Mir-8-P18 Pcr-Mir-8-P19 Pdu-Mir-8 Pfl-Mir-8 Pma-Mir-8-P1o2 Pma-Mir-8-P2o2 Pma-Mir-8-P3o2 Pmi-Mir-8 Pve-Mir-8 Rno-Mir-8-P1a Rno-Mir-8-P1b Rno-Mir-8-P2a Rno-Mir-8-P2b Rno-Mir-8-P3a Rph-Mir-8 Sha-Mir-8-P1a Sha-Mir-8-P1b Sha-Mir-8-P2a Sha-Mir-8-P2b Sha-Mir-8-P3a Sko-Mir-8 Sme-Mir-8-P14 Sme-Mir-8-P15 Snu-Mir-8 Spt-Mir-8-P1a Spt-Mir-8-P2a Spt-Mir-8-P3a Spu-Mir-8 Sto-Mir-8-P1a Sto-Mir-8-P2a Sto-Mir-8-P3a Tca-Mir-8 Tgu-Mir-8-P1a Tgu-Mir-8-P2a Tni-Mir-8-P1a Tni-Mir-8-P2a Tni-Mir-8-P3a Tur-Mir-8 War-Mir-8 Xla-Mir-8-P1a1 Xla-Mir-8-P1a2 Xla-Mir-8-P2a1 Xla-Mir-8-P2a2 Xla-Mir-8-P3a1 Xla-Mir-8-P3a2 Xtr-Mir-8-P1a Xtr-Mir-8-P2a Xtr-Mir-8-P3a

Node of Origin (locus)

Nephrozoa

Node of Origin (family)

Nephrozoa

Genome context
(GCA_000237925.5_SM_V9_genomic)

HE601624.3: 14354984-14355039 [-] UCSC Ensembl

Seed

Precursor
(pre-Mir +30nt flank)

UAUUGUUUAAAAUAACAAGAAUGAGUGUGACAUCUUACUAACAGUAUUUGACAAACUACUUUCUAAUACUGUUAGGUAAAGAUGCCAGCUCAAUUCUUUGUACUUCUGUGAAUAGA

Get precursor sequence

Structure

        10          20         30          40        50      
UAUUGUUUAAAAUAACA--    -     G  A      A--|          U  CAAA 
                   AGAA UGAGU UG CAUCUU   CUAACAGUAUU GA    C
                   UCUU ACUCG AC GUAGAA   GAUUGUCAUAA CU    U
AGAUAAGUGUCUUCAUGUU    A     -  C      AUG^          U  UUCA 
    110       100        90         80        70        60

Deep sequencing

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3' NTU

No

Motifs

CNNC at 3p(+17)

Tissue expression

-

+

Ad	Ad	Ad	Ad	Ad	Ad	Ad	Ad	Ad	Ad	Ad	Ad	Ad	Ad	Ad	Ce	Ce	Ce	Eg	Eg	Eg	Eg	Eg	Eg	Mi	Mi	Sc	Sc	Sc	Sm	Sm	Sp	Sp	Sp

Star sequence

Sma-Mir-8_5p* (predicted)

mirBase accession

Sequence

0- CAUCUUACUAACAGUAUUUGA -21

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Mature sequence

Sma-Mir-8_3p

mirBase accession

Sequence

33- UAAUACUGUUAGGUAAAGAUGCC -56

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