Mir-8-P3b

MirGeneDB ID

Dre-Mir-8-P3b

Family name

MIR-8 (all species)

Species

Zebrafish (Danio rerio)

MiRBase ID

dre-mir-429b

Paralogues

Dre-Mir-8-P1a Dre-Mir-8-P1b Dre-Mir-8-P2a Dre-Mir-8-P2b Dre-Mir-8-P3a

Orthologues

Aae-Mir-8 Aga-Mir-8 Agr-Mir-8 Asu-Mir-8 Bfl-Mir-8-P3 Bge-Mir-8 Bko-Mir-8 Bla-Mir-8-P3 Bpl-Mir-8 Cbr-Mir-8 Cel-Mir-8 Csc-Mir-8 Cte-Mir-8 Dan-Mir-8 Dgr-Mir-8 Dlo-Mir-8 Dma-Mir-8 Dme-Mir-8 Dmo-Mir-8 Dpu-Mir-8 Dsi-Mir-8 Dya-Mir-8 Eba-Mir-8 Egr-Mir-8 Esc-Mir-8 Gpa-Mir-8 Gsa-Mir-8 Hme-Mir-8 Hru-Mir-8 Isc-Mir-8 Lan-Mir-8 Lgi-Mir-8 Lhy-Mir-8 Llo-Mir-8 Mgi-Mir-8 Mom-Mir-8 Npo-Mir-8 Obi-Mir-8 Ofu-Mir-8 Ovu-Mir-8 Pau-Mir-8 Pca-Mir-8 Pdu-Mir-8 Pfl-Mir-8 Pmi-Mir-8 Pve-Mir-8 Rph-Mir-8 Sko-Mir-8 Sma-Mir-8 Snu-Mir-8 Spu-Mir-8 Tca-Mir-8 Tur-Mir-8 War-Mir-8

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Nephrozoa

Genome context
(danRer11)

chr6: 40653151-40653208 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-8-P3b)

Mir-8-P3b chr6: 40653151-40653208 [-] UCSC Ensembl
Mir-8-P2b chr6: 40656013-40656073 [-] UCSC Ensembl
Mir-8-P1b chr6: 40656216-40656274 [-] UCSC Ensembl

Seed

AAUACUG

Precursor
(pre-Mir +30nt flank)

UCUAUACUGCAGUAAAAUCCUCUGAUUUGUGUCUUACCAGGCAAGUUUAGAUGUUGAUACUGUGUCUAAUACUGCCUGGUAAUGCCAUCAAUCACUGGGAAUUUGAUCGCCAUUUUCC

Get precursor sequence

Structure

        10         20         30         40         50        
UCUAUACUGCAGUAAAA-    C-     U  -| C          A  -     UGUUGA 
                  UCCU  UGAUU GU GU UUACCAGGCA GU UUAGA      \
                  AGGG  ACUAA UA CG AAUGGUCCGU CA AAUCU      U
CCUUUUACCGCUAGUUUA    UC     C  C^ U          -  U     GUGUCA 
      110       100        90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UGUG in loop

Tissue expression

Br	Br	Em	Ey	Gu	Gu	He	Li	Li	Ov	Te

Star sequence

Dre-Mir-8-P3b_5p*

mirBase accession

None

Sequence

0- GUCUUACCAGGCAAGUUUAGA -21

Get sequence

Mature sequence

Dre-Mir-8-P3b_3p

mirBase accession

MIMAT0011291

Sequence

36- UAAUACUGCCUGGUAAUGCCAU -58

Get sequence

Proposed targets

TargetScanFish: dre-miR-429b