Mir-8-P3

MirGeneDB ID

Bfl-Mir-8-P3

Family name

MIR-8 (all species)

Species

Florida lancelet (Branchiostoma floridae)

MiRBase ID

bfl-mir-200b

Paralogues

Bfl-Mir-8-P1-v1 Bfl-Mir-8-P2

Orthologues

Aae-Mir-8 Aca-Mir-8-P3a Aga-Mir-8 Agr-Mir-8 Ami-Mir-8-P3a Asu-Mir-8 Bge-Mir-8 Bko-Mir-8 Bla-Mir-8-P3 Bpl-Mir-8 Bta-Mir-8-P3a Cbr-Mir-8 Cel-Mir-8 Cfa-Mir-8-P3a Cja-Mir-8-P3a Cli-Mir-8-P3a Cmi-Mir-8-P3a Cpi-Mir-8-P3a Cpo-Mir-8-P3a Csc-Mir-8 Cte-Mir-8 Dan-Mir-8 Dgr-Mir-8 Dlo-Mir-8 Dma-Mir-8 Dme-Mir-8 Dmo-Mir-8 Dno-Mir-8-P3a Dpu-Mir-8 Dre-Mir-8-P3a Dre-Mir-8-P3b Dsi-Mir-8 Dya-Mir-8 Eba-Mir-8 Ebu-Mir-8-P3o1 Eca-Mir-8-P3a Egr-Mir-8 Esc-Mir-8 Ete-Mir-8-P3a Gga-Mir-8-P3a Gja-Mir-8-P3a Gmo-Mir-8-P3a Gpa-Mir-8 Gsa-Mir-8 Hme-Mir-8 Hru-Mir-8 Hsa-Mir-8-P3a Isc-Mir-8 Laf-Mir-8-P3a Lan-Mir-8 Lch-Mir-8-P3a Lgi-Mir-8 Lhy-Mir-8 Llo-Mir-8 Loc-Mir-8-P3a Mal-Mir-8-P3a Mdo-Mir-8-P3a Mgi-Mir-8 Mml-Mir-8-P3a Mmr-Mir-8-P3a Mmu-Mir-8-P3a Mom-Mir-8 Mun-Mir-8-P3a Neu-Mir-8-P3a Npo-Mir-8 Oan-Mir-8-P3a Obi-Mir-8 Ocu-Mir-8-P3a Ofu-Mir-8 Ovu-Mir-8 Pab-Mir-8-P3a Pau-Mir-8 Pbv-Mir-8-P3a Pca-Mir-8 Pdu-Mir-8 Pfl-Mir-8 Pma-Mir-8-P3o2 Pmi-Mir-8 Pve-Mir-8 Rno-Mir-8-P3a Rph-Mir-8 Sha-Mir-8-P3a Sko-Mir-8 Sma-Mir-8 Snu-Mir-8 Spt-Mir-8-P3a Spu-Mir-8 Sto-Mir-8-P3a Tca-Mir-8 Tni-Mir-8-P3a Tur-Mir-8 War-Mir-8 Xla-Mir-8-P3a1 Xla-Mir-8-P3a2 Xtr-Mir-8-P3a

Node of Origin (locus)

Chordata

Node of Origin (family)

Nephrozoa

Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic)

NC_049992.1: 3174683-3174743 [-] UCSC

Clustered miRNAs
(< 50kb from Mir-8-P3)

Mir-8-P3 NC_049992.1: 3174683-3174743 [-] UCSC
Mir-8-P2 NC_049992.1: 3177478-3177535 [-] UCSC
Mir-8-P1-v1 NC_049992.1: 3180219-3180276 [-] UCSC
Mir-8-P1-v2 NC_049992.1: 3180219-3180276 [-] UCSC

Seed

AAUACUG

Precursor
(pre-Mir +30nt flank)

GCAAUGCCGCACAGUUUGGGAUCUCGGCAACAUCUUACCAGGCAGCAUUUAGUUUUUGAAAGGAAUACUAAUACUGUCUGGUAAUGAUGUUGGUGGGGUUCAAACAGUCAUCAUGGUCCAU

Get precursor sequence

Structure

        10          20        30         40        50          
GCAAUGCCGCACAGUUUG--        G       -|          CAU     UUUUGA 
                    GGAUCUCG CAACAUC UUACCAGGCAG   UUAGU      \
                    CUUGGGGU GUUGUAG AAUGGUCUGUC   AAUCA      A
UACCUGGUACUACUGACAAA        G       U^          AU-     UAAGGA 
 .       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

To

Star sequence

Bfl-Mir-8-P3_5p* (predicted)

mirBase accession

None

Sequence

0- CAUCUUACCAGGCAGCAUUUAGU -23

Get sequence

Mature sequence

Bfl-Mir-8-P3_3p

mirBase accession

MIMAT0009492

Sequence

38- UAAUACUGUCUGGUAAUGAUGUU -61

Get sequence