Mir-8-P3a

MirGeneDB ID

Cja-Mir-8-P3a

Family name

MIR-8 (all species)

Species

White-tufted-ear marmoset (Callithrix jacchus)

MiRBase ID

Paralogues

Cja-Mir-8-P1a Cja-Mir-8-P1b Cja-Mir-8-P2a Cja-Mir-8-P2b

Orthologues

Aae-Mir-8 Aca-Mir-8-P3a Aga-Mir-8 Agr-Mir-8 Ami-Mir-8-P3a Asu-Mir-8 Bfl-Mir-8-P3 Bge-Mir-8 Bko-Mir-8 Bla-Mir-8-P3 Bpl-Mir-8 Bta-Mir-8-P3a Cbr-Mir-8 Cel-Mir-8 Cfa-Mir-8-P3a Cli-Mir-8-P3a Cmi-Mir-8-P3a Cpi-Mir-8-P3a Cpo-Mir-8-P3a Csc-Mir-8 Cte-Mir-8 Dan-Mir-8 Dgr-Mir-8 Dlo-Mir-8 Dma-Mir-8 Dme-Mir-8 Dmo-Mir-8 Dno-Mir-8-P3a Dpu-Mir-8 Dre-Mir-8-P3a Dsi-Mir-8 Dya-Mir-8 Eba-Mir-8 Eca-Mir-8-P3a Egr-Mir-8 Esc-Mir-8 Ete-Mir-8-P3a Gga-Mir-8-P3a Gja-Mir-8-P3a Gmo-Mir-8-P3a Gpa-Mir-8 Gsa-Mir-8 Hme-Mir-8 Hru-Mir-8 Hsa-Mir-8-P3a Isc-Mir-8 Laf-Mir-8-P3a Lan-Mir-8 Lch-Mir-8-P3a Lgi-Mir-8 Lhy-Mir-8 Llo-Mir-8 Loc-Mir-8-P3a Mal-Mir-8-P3a Mdo-Mir-8-P3a Mgi-Mir-8 Mml-Mir-8-P3a Mmr-Mir-8-P3a Mmu-Mir-8-P3a Mom-Mir-8 Mun-Mir-8-P3a Neu-Mir-8-P3a Npo-Mir-8 Oan-Mir-8-P3a Obi-Mir-8 Ocu-Mir-8-P3a Ofu-Mir-8 Ovu-Mir-8 Pab-Mir-8-P3a Pau-Mir-8 Pbv-Mir-8-P3a Pca-Mir-8 Pdu-Mir-8 Pfl-Mir-8 Pmi-Mir-8 Pve-Mir-8 Rno-Mir-8-P3a Rph-Mir-8 Sha-Mir-8-P3a Sko-Mir-8 Sma-Mir-8 Snu-Mir-8 Spt-Mir-8-P3a Spu-Mir-8 Sto-Mir-8-P3a Tca-Mir-8 Tni-Mir-8-P3a Tur-Mir-8 War-Mir-8 Xla-Mir-8-P3a1 Xla-Mir-8-P3a2 Xtr-Mir-8-P3a

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Nephrozoa

Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)

CM021921.1: 36566153-36566209 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-8-P3a)

Mir-8-P1a CM021921.1: 36564476-36564534 [+] UCSC Ensembl
Mir-8-P2a CM021921.1: 36565186-36565246 [+] UCSC Ensembl
Mir-8-P3a CM021921.1: 36566153-36566209 [+] UCSC Ensembl

Seed

AUUACUG

Precursor
(pre-Mir +30nt flank)

GGCCGCCCACACCACUGCCGGGGGAUGAACGUCUUACCAGACACGGUUAGACCUGCCCUCUGUCUAAUUACUGUCUGGUAAAACCGUCCAUCCGCGGCCUGAUCGCCGCUGGAGGAG

Get precursor sequence

Structure

        10           20        30         40         50       
GGCCGCCCACACCACUG---   G G    A   UC-          C-|      CCUGC 
                    CCG G GAUG ACG   UUACCAGACA  GGUUAGA     \
                    GGC C CUAC UGC   AAUGGUCUGU  UUAAUCU     C
GAGGAGGUCGCCGCUAGUCC   G -    C   CAA          CA^      GUCUC 
     110       100         90        80        70        60

Deep sequencing

3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

To

Star sequence

Cja-Mir-8-P3a_5p* (predicted)

mirBase accession

None

Sequence

0- GUCUUACCAGACACGGUUAGA -21

Get sequence

Mature sequence

Cja-Mir-8-P3a_3p (predicted)

mirBase accession

None

Sequence

35- AAUUACUGUCUGGUAAAACCGU -57

Get sequence