Mir-8-P3a

MirGeneDB ID

Loc-Mir-8-P3a

Family name

MIR-8 (all species)

Species

Spotted gar (Lepisosteus oculatus)

MiRBase ID

Paralogues

Loc-Mir-8-P1a Loc-Mir-8-P2a

Orthologues

Aae-Mir-8 Aca-Mir-8-P3a Aga-Mir-8 Agr-Mir-8 Ami-Mir-8-P3a Asu-Mir-8 Bfl-Mir-8-P3 Bge-Mir-8 Bko-Mir-8 Bla-Mir-8-P3 Bpl-Mir-8 Bta-Mir-8-P3a Cbr-Mir-8 Cel-Mir-8 Cfa-Mir-8-P3a Cja-Mir-8-P3a Cli-Mir-8-P3a Cmi-Mir-8-P3a Cpi-Mir-8-P3a Cpo-Mir-8-P3a Csc-Mir-8 Cte-Mir-8 Dan-Mir-8 Dgr-Mir-8 Dlo-Mir-8 Dma-Mir-8 Dme-Mir-8 Dmo-Mir-8 Dno-Mir-8-P3a Dpu-Mir-8 Dre-Mir-8-P3a Dsi-Mir-8 Dya-Mir-8 Eba-Mir-8 Eca-Mir-8-P3a Egr-Mir-8 Esc-Mir-8 Ete-Mir-8-P3a Gga-Mir-8-P3a Gja-Mir-8-P3a Gmo-Mir-8-P3a Gpa-Mir-8 Gsa-Mir-8 Hme-Mir-8 Hru-Mir-8 Hsa-Mir-8-P3a Isc-Mir-8 Laf-Mir-8-P3a Lan-Mir-8 Lch-Mir-8-P3a Lgi-Mir-8 Lhy-Mir-8 Llo-Mir-8 Mal-Mir-8-P3a Mdo-Mir-8-P3a Mgi-Mir-8 Mml-Mir-8-P3a Mmr-Mir-8-P3a Mmu-Mir-8-P3a Mom-Mir-8 Mun-Mir-8-P3a Neu-Mir-8-P3a Npo-Mir-8 Oan-Mir-8-P3a Obi-Mir-8 Ocu-Mir-8-P3a Ofu-Mir-8 Ovu-Mir-8 Pab-Mir-8-P3a Pau-Mir-8 Pbv-Mir-8-P3a Pca-Mir-8 Pdu-Mir-8 Pfl-Mir-8 Pmi-Mir-8 Pve-Mir-8 Rno-Mir-8-P3a Rph-Mir-8 Sha-Mir-8-P3a Sko-Mir-8 Sma-Mir-8 Snu-Mir-8 Spt-Mir-8-P3a Spu-Mir-8 Sto-Mir-8-P3a Tca-Mir-8 Tni-Mir-8-P3a Tur-Mir-8 War-Mir-8 Xla-Mir-8-P3a1 Xla-Mir-8-P3a2 Xtr-Mir-8-P3a

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Nephrozoa

Genome context
(LepOcu1)

LG25: 13737285-13737343 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-8-P3a)

Mir-8-P1a LG25: 13732832-13732891 [+] Ensembl
Mir-8-P2a LG25: 13733478-13733538 [+] Ensembl
Mir-8-P3a LG25: 13737285-13737343 [+] Ensembl

Seed

AAUACUG

Precursor
(pre-Mir +30nt flank)

GGCCAAAGCAUGACCUGCCUGUUGAUAGACGUCUUACCAGACAAGGUUAGAUCUAGCUAUUCCUGUCUAAUACUGUCUGGUAAUGCCGUUCAUUACGUGGCACAAUCCCUGCGCUUCGC

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Structure

        10           20        30         40        50        
GGCCAAAGCAUGACCUG--  -|  U   AG   - C          AG      UCUAGC 
                   CC UGU GAU  ACG U UUACCAGACA  GUUAGA      U
                   GG GCA UUA  UGC G AAUGGUCUGU  UAAUCU      A
CGCUUCGCGUCCCUAACAC  U^  -   CU   C U          CA      GUCCUU 
       110       100         90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Br	Br	He	He	He	He	Ov	Ov	Ov	Ov	Te	Te	Te	Te	To

Star sequence

Loc-Mir-8-P3a_5p* (predicted)

mirBase accession

None

Sequence

0- GUCUUACCAGACAAGGUUAGA -21

Get sequence

Mature sequence

Loc-Mir-8-P3a_3p

mirBase accession

None

Sequence

37- UAAUACUGUCUGGUAAUGCCGU -59

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