Mir-8-P3a

MirGeneDB ID

Sha-Mir-8-P3a

Family name

MIR-8 (all species)

Species

Tasmanian devil (Sarcophilus harrisii)

MiRBase ID

Paralogues

Sha-Mir-8-P1a Sha-Mir-8-P1b Sha-Mir-8-P2a Sha-Mir-8-P2b

Orthologues

Aae-Mir-8 Aca-Mir-8-P3a Aga-Mir-8 Agr-Mir-8 Ami-Mir-8-P3a Asu-Mir-8 Bfl-Mir-8-P3 Bge-Mir-8 Bko-Mir-8 Bla-Mir-8-P3 Bpl-Mir-8 Bta-Mir-8-P3a Cbr-Mir-8 Cel-Mir-8 Cfa-Mir-8-P3a Cja-Mir-8-P3a Cli-Mir-8-P3a Cmi-Mir-8-P3a Cpi-Mir-8-P3a Cpo-Mir-8-P3a Csc-Mir-8 Cte-Mir-8 Dan-Mir-8 Dgr-Mir-8 Dlo-Mir-8 Dma-Mir-8 Dme-Mir-8 Dmo-Mir-8 Dno-Mir-8-P3a Dpu-Mir-8 Dre-Mir-8-P3a Dsi-Mir-8 Dya-Mir-8 Eba-Mir-8 Eca-Mir-8-P3a Egr-Mir-8 Esc-Mir-8 Ete-Mir-8-P3a Gga-Mir-8-P3a Gja-Mir-8-P3a Gmo-Mir-8-P3a Gpa-Mir-8 Gsa-Mir-8 Hme-Mir-8 Hru-Mir-8 Hsa-Mir-8-P3a Isc-Mir-8 Laf-Mir-8-P3a Lan-Mir-8 Lch-Mir-8-P3a Lgi-Mir-8 Lhy-Mir-8 Llo-Mir-8 Loc-Mir-8-P3a Mal-Mir-8-P3a Mdo-Mir-8-P3a Mgi-Mir-8 Mml-Mir-8-P3a Mmr-Mir-8-P3a Mmu-Mir-8-P3a Mom-Mir-8 Mun-Mir-8-P3a Neu-Mir-8-P3a Npo-Mir-8 Oan-Mir-8-P3a Obi-Mir-8 Ocu-Mir-8-P3a Ofu-Mir-8 Ovu-Mir-8 Pab-Mir-8-P3a Pau-Mir-8 Pbv-Mir-8-P3a Pca-Mir-8 Pdu-Mir-8 Pfl-Mir-8 Pmi-Mir-8 Pve-Mir-8 Rno-Mir-8-P3a Rph-Mir-8 Sko-Mir-8 Sma-Mir-8 Snu-Mir-8 Spt-Mir-8-P3a Spu-Mir-8 Sto-Mir-8-P3a Tca-Mir-8 Tni-Mir-8-P3a Tur-Mir-8 War-Mir-8 Xla-Mir-8-P3a1 Xla-Mir-8-P3a2 Xtr-Mir-8-P3a

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Nephrozoa

Genome context
(DEVIL_add)

GL849763.1: 166823-166881 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-8-P3a)

Mir-8-P1a GL849763.1: 160136-160195 [+] UCSC Ensembl
Mir-8-P2a GL849763.1: 162456-162515 [+] UCSC Ensembl
Mir-8-P3a GL849763.1: 166823-166881 [+] UCSC Ensembl

Seed

AAUACUG

Precursor
(pre-Mir +30nt flank)

UCCCACUGGAUAUGGUGCCUGCUGAUUGGUGUCUUACCAGACAAAGUUAGAUCUCGCUAUUUCUGUCUAAUACUGUCUGGUAAUGCCAUUGGUCACACUGGCAAGAUCUUCGUCUCCGA

Get precursor sequence

Structure

        10         20         30         40        50        
UCCCACUGGAUAUGGUG-  UGC-    UG  -| C          AA      UCUCGC 
                  CC    UGAU  GU GU UUACCAGACA  GUUAGA      U
                  GG    ACUG  UA CG AAUGGUCUGU  UAAUCU      A
AGCCUCUGCUUCUAGAAC  UCAC    GU  C^ U          CA      GUCUUU 
       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Bo	Br	He	Ki	Li	Ly	Pa	Sk	Sp	Te

Star sequence

Sha-Mir-8-P3a_5p*

mirBase accession

None

Sequence

0- GUCUUACCAGACAAAGUUAGA -21

Get sequence

Mature sequence

Sha-Mir-8-P3a_3p

mirBase accession

None

Sequence

37- UAAUACUGUCUGGUAAUGCCAU -59

Get sequence