Mir-8-P3a

MirGeneDB ID

Rno-Mir-8-P3a

Family name

MIR-8 (all species)

Seed

AAUACUG

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-429

Paralogues

Rno-Mir-8-P1a Rno-Mir-8-P1b Rno-Mir-8-P2a Rno-Mir-8-P2b

Orthologues

Aae-Mir-8 Aca-Mir-8-P3a Ami-Mir-8-P3a Asu-Mir-8 Bfl-Mir-8-P3 Bge-Mir-8 Bla-Mir-8-P3 Bpl-Mir-8 Bta-Mir-8-P3a Cbr-Mir-8 Cel-Mir-8 Cfa-Mir-8-P3a Cgi-Mir-8 Cli-Mir-8-P3a Cmi-Mir-8-P3a Cpi-Mir-8-P3a Cpo-Mir-8-P3a Csc-Mir-8 Cte-Mir-8 Dan-Mir-8 Dma-Mir-8 Dme-Mir-8 Dmo-Mir-8 Dno-Mir-8-P3a Dpu-Mir-8 Dre-Mir-8-P3a Dsi-Mir-8 Dya-Mir-8 Esc-Mir-8 Ete-Mir-8-P3a Gga-Mir-8-P3a Gja-Mir-8-P3a Gmo-Mir-8-P3a Hme-Mir-8 Hsa-Mir-8-P3a Isc-Mir-8 Lan-Mir-8 Lch-Mir-8-P3a Lgi-Mir-8 Loc-Mir-8-P3a Mal-Mir-8-P3a Mdo-Mir-8-P3a Mml-Mir-8-P3a Mmu-Mir-8-P3a Mun-Mir-8-P3a Npo-Mir-8 Oan-Mir-8-P3a Obi-Mir-8 Ocu-Mir-8-P3a Ovu-Mir-8 Pbv-Mir-8-P3a Pfl-Mir-8 Pmi-Mir-8 Sha-Mir-8-P3a Sko-Mir-8 Spt-Mir-8-P3a Spu-Mir-8 Sto-Mir-8-P3a Tca-Mir-8 Tni-Mir-8-P3a Xla-Mir-8-P3a1 Xla-Mir-8-P3a2 Xtr-Mir-8-P3a

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Bilateria

Genome context
(rn6)

chr5: 173488342-173488400 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-8-P3a)

Mir-8-P3a chr5: 173488342-173488400 [-] UCSC Ensembl
Mir-8-P2a chr5: 173489379-173489439 [-] UCSC Ensembl
Mir-8-P1a chr5: 173490160-173490218 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCUUGUACAAUGCACUGCCUGCUGAUGGAUGUCUUACCAGACAUGGUUAGAUCUGGAUGUAUCUGUCUAAUACUGUCUGGUAAUGCCGUCCAUCCAUGGCCUUAUCGCCGCCGGAGACG

Get precursor sequence

Structure

        10        20           30         40        50        
CCUUGUACAAUGCACUGCCU   ---       -| C          UG      UCUGGA 
                    GCU   GAUGGAU GU UUACCAGACA  GUUAGA      U
                    CGG   CUACCUG CG AAUGGUCUGU  UAAUCU      G
GCAGAGGCCGCCGCUAUUC-   UAC       C^ U          CA      GUCUAU 
       110        100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Ad	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Dr	Dr	Du	Du	Du	Du	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Li	Li	Li	Li	Me	Me	Mu	Mu	Mu	Mu	Mu	Mu	Mu	Mu	Ov	Pa	Pa	St	St	St	Te	Ut	Wh	Br	Fa	He	Ki	La	Li	Li	Lu	Mu	Pa	Sk	Sm	Sp	St	Te	Th

Star sequence

Rno-Mir-8-P3a_5p*

mirBase accession

None

Sequence

0- GUCUUACCAGACAUGGUUAGA -21

Get sequence

Mature sequence

Rno-Mir-8-P3a_3p

mirBase accession

MIMAT0001538

Sequence

37- UAAUACUGUCUGGUAAUGCCGU -59

Get sequence

Proposed targets

microrna.org: MIMAT0001538
TargetScanVert: rno-miR-429
miRDB: MIMAT0001538