Mir-8-P3a

MirGeneDB ID

Gja-Mir-8-P3a

Family name

MIR-8 (all species)

Species

Schlegels Japanese gecko (Gekko japonicus)

MiRBase ID

Paralogues

Gja-Mir-8-P1a Gja-Mir-8-P2a

Orthologues

Aae-Mir-8 Aca-Mir-8-P3a Aga-Mir-8 Agr-Mir-8 Ami-Mir-8-P3a Asu-Mir-8 Bfl-Mir-8-P3 Bge-Mir-8 Bko-Mir-8 Bla-Mir-8-P3 Bpl-Mir-8 Bta-Mir-8-P3a Cbr-Mir-8 Cel-Mir-8 Cfa-Mir-8-P3a Cja-Mir-8-P3a Cli-Mir-8-P3a Cmi-Mir-8-P3a Cpi-Mir-8-P3a Cpo-Mir-8-P3a Csc-Mir-8 Cte-Mir-8 Dan-Mir-8 Dgr-Mir-8 Dlo-Mir-8 Dma-Mir-8 Dme-Mir-8 Dmo-Mir-8 Dno-Mir-8-P3a Dpu-Mir-8 Dre-Mir-8-P3a Dsi-Mir-8 Dya-Mir-8 Eba-Mir-8 Eca-Mir-8-P3a Egr-Mir-8 Esc-Mir-8 Ete-Mir-8-P3a Gga-Mir-8-P3a Gmo-Mir-8-P3a Gpa-Mir-8 Gsa-Mir-8 Hme-Mir-8 Hru-Mir-8 Hsa-Mir-8-P3a Isc-Mir-8 Laf-Mir-8-P3a Lan-Mir-8 Lch-Mir-8-P3a Lgi-Mir-8 Lhy-Mir-8 Llo-Mir-8 Loc-Mir-8-P3a Mal-Mir-8-P3a Mdo-Mir-8-P3a Mgi-Mir-8 Mml-Mir-8-P3a Mmr-Mir-8-P3a Mmu-Mir-8-P3a Mom-Mir-8 Mun-Mir-8-P3a Neu-Mir-8-P3a Npo-Mir-8 Oan-Mir-8-P3a Obi-Mir-8 Ocu-Mir-8-P3a Ofu-Mir-8 Ovu-Mir-8 Pab-Mir-8-P3a Pau-Mir-8 Pbv-Mir-8-P3a Pca-Mir-8 Pdu-Mir-8 Pfl-Mir-8 Pmi-Mir-8 Pve-Mir-8 Rno-Mir-8-P3a Rph-Mir-8 Sha-Mir-8-P3a Sko-Mir-8 Sma-Mir-8 Snu-Mir-8 Spt-Mir-8-P3a Spu-Mir-8 Sto-Mir-8-P3a Tca-Mir-8 Tni-Mir-8-P3a Tur-Mir-8 War-Mir-8 Xla-Mir-8-P3a1 Xla-Mir-8-P3a2 Xtr-Mir-8-P3a

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Nephrozoa

Genome context
(GCF_001447785.1_Gekko_japonicus)

NW_015166420.1: 1655918-1655977 [+]

Clustered miRNAs
(< 50kb from Mir-8-P3a)

Mir-8-P1a NW_015166420.1: 1645418-1645477 [+]
Mir-8-P2a NW_015166420.1: 1649786-1649846 [+]
Mir-8-P3a NW_015166420.1: 1655918-1655977 [+]

Seed

AAUACUG

Precursor
(pre-Mir +30nt flank)

UCCUACAGGGCCGCCUGCCUGCCGAUCGCUGUCUUACCAGACACAGUUAGAUCUUAGCUAUUCCUGUCUAAUACUGUCUGGUAAUGCCGUCGAUCGCAUCGGCAAAGUCUUCACCUUGAA

Get precursor sequence

Structure

        10           20         30        40        50         
UCCUACAGGGCCGCCUG-  --|  C     - U  C          CA       CUUAGC 
                  CC  UGC GAUCG C GU UUACCAGACA  GUUAGAU      \
                  GG  ACG CUAGC G CG AAUGGUCUGU  UAAUCUG      U
AAGUUCCACUUCUGAAAC  CU^  -     U C  U          CA       UCCUUA 
.       110       100         90        80        70        60

Deep sequencing

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3' NTU

Motifs

Tissue expression

To

Star sequence

Gja-Mir-8-P3a_5p*

mirBase accession

None

Sequence

0- GUCUUACCAGACACAGUUAGAU -22

Get sequence

Mature sequence

Gja-Mir-8-P3a_3p

mirBase accession

None

Sequence

38- UAAUACUGUCUGGUAAUGCCGU -60

Get sequence