Mir-8-P3a

MirGeneDB ID

Gja-Mir-8-P3a

Family name

MIR-8 (all species)

Seed

AAUACUG

Species

Schlegels Japanese gecko (Gekko japonicus)

MiRBase ID

Paralogues

Gja-Mir-8-P1a Gja-Mir-8-P2a

Orthologues

Aae-Mir-8 Aca-Mir-8-P3a Ami-Mir-8-P3a Asu-Mir-8 Bfl-Mir-8-P3 Bge-Mir-8 Bla-Mir-8-P3 Bpl-Mir-8 Bta-Mir-8-P3a Cbr-Mir-8 Cel-Mir-8 Cfa-Mir-8-P3a Cgi-Mir-8 Cli-Mir-8-P3a Cmi-Mir-8-P3a Cpi-Mir-8-P3a Cpo-Mir-8-P3a Csc-Mir-8 Cte-Mir-8 Dan-Mir-8 Dma-Mir-8 Dme-Mir-8 Dmo-Mir-8 Dno-Mir-8-P3a Dpu-Mir-8 Dre-Mir-8-P3a Dsi-Mir-8 Dya-Mir-8 Esc-Mir-8 Ete-Mir-8-P3a Gga-Mir-8-P3a Gmo-Mir-8-P3a Hme-Mir-8 Hsa-Mir-8-P3a Isc-Mir-8 Lan-Mir-8 Lch-Mir-8-P3a Lgi-Mir-8 Loc-Mir-8-P3a Mal-Mir-8-P3a Mdo-Mir-8-P3a Mml-Mir-8-P3a Mmu-Mir-8-P3a Mun-Mir-8-P3a Npo-Mir-8 Oan-Mir-8-P3a Obi-Mir-8 Ocu-Mir-8-P3a Ovu-Mir-8 Pbv-Mir-8-P3a Pfl-Mir-8 Pmi-Mir-8 Rno-Mir-8-P3a Sha-Mir-8-P3a Sko-Mir-8 Spt-Mir-8-P3a Spu-Mir-8 Sto-Mir-8-P3a Tca-Mir-8 Tni-Mir-8-P3a Xla-Mir-8-P3a1 Xla-Mir-8-P3a2 Xtr-Mir-8-P3a

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Bilateria

Genome context
(GCF_001447785.1_Gekko_japonicus)

NW_015166420.1: 1655918-1655977 [+]

Precursor
(pre-Mir +30nt flank)

UCCUACAGGGCCGCCUGCCUGCCGAUCGCUGUCUUACCAGACACAGUUAGAUCUUAGCUAUUCCUGUCUAAUACUGUCUGGUAAUGCCGUCGAUCGCAUCGGCAAAGUCUUCACCUUGAA

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Structure

        10           20         30        40        50         
UCCUACAGGGCCGCCUG-  --|  C     - U  C          CA       CUUAGC 
                  CC  UGC GAUCG C GU UUACCAGACA  GUUAGAU      \
                  GG  ACG CUAGC G CG AAUGGUCUGU  UAAUCUG      U
AAGUUCCACUUCUGAAAC  CU^  -     U C  U          CA       UCCUUA 
.       110       100         90        80        70        60

Deep sequencing

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3' NTU

Motifs

Tissue expression

To

Star sequence

Gja-Mir-8-P3a_5p*

mirBase accession

None

Sequence

0- GUCUUACCAGACACAGUUAGAU -22

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Mature sequence

Gja-Mir-8-P3a_3p

mirBase accession

None

Sequence

38- UAAUACUGUCUGGUAAUGCCGU -60

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