MirGeneDB

MirGeneDB ID

Aca-Mir-8-P3a

Family name MIR-8 (all species)
Seed AAUACUG
Species Green anole lizard (Anolis carolinensis)
MiRBase ID aca-mir-429
Paralogues Aca-Mir-8-P1a  Aca-Mir-8-P2a 
Orthologues Aae-Mir-8  Ami-Mir-8-P3a  Asu-Mir-8  Bfl-Mir-8-P3  Bge-Mir-8  Bta-Mir-8-P3a  Cbr-Mir-8  Cel-Mir-8  Cfa-Mir-8-P3a  Cgi-Mir-8  Cli-Mir-8-P3a  Cpi-Mir-8-P3a  Cpo-Mir-8-P3a  Cte-Mir-8  Dan-Mir-8  Dme-Mir-8  Dmo-Mir-8  Dno-Mir-8-P3a  Dpu-Mir-8  Dre-Mir-8-P3a  Ete-Mir-8-P3a  Gga-Mir-8-P3a  Hme-Mir-8  Hsa-Mir-8-P3a  Isc-Mir-8  Lan-Mir-8  Lgi-Mir-8  Mdo-Mir-8-P3a  Mml-Mir-8-P3a  Mmu-Mir-8-P3a  Oan-Mir-8-P3a  Ocu-Mir-8-P3a  Pfl-Mir-8  Pmi-Mir-8  Rno-Mir-8-P3a  Sha-Mir-8-P3a  Sko-Mir-8  Spu-Mir-8  Sto-Mir-8-P3a  Xtr-Mir-8-P3a 
Node of Origin (locus) Vertebrata
Node of Origin (family) Bilateria
Genome context
(anoCar2)
GL343647.1: 283347-283406 [+] UCSC Ensembl
Clustered MiRNAs
(< 10kb from Mir-8-P3a)
Mir-8-P2a GL343647.1: 274657-274716 [+] UCSC Ensembl
Mir-8-P1a GL343647.1: 276664-276724 [+] UCSC Ensembl
Mir-8-P3a GL343647.1: 283347-283406 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAUGACAAUUCCCACCGCCUGCUGAUCGCUGUCUUACCAGACAAAGUUAGAUCUUAGCUAUCCCCGUCUAAUACUGUCUGGUAAUGCCGUCGAUCGCAUUGGCAAUGUCUUCGCUUUGAA
Get precursor sequence
Structure
        10           20         30        40        50         
GAUGACAAUUCCCACCG-  --|  U     - U  C          AA      UCUUAGC 
                  CC  UGC GAUCG C GU UUACCAGACA  GUUAGA       \
                  GG  ACG CUAGC G CG AAUGGUCUGU  UAAUCU       U
AAGUUUCGCUUCUGUAAC  UU^  -     U C  U          CA      GCCCCUA 
.       110       100         90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Sk To Wh
Star sequence

Aca-Mir-8-P3a_5p*

MirBase accessionMIMAT0021956
Sequence
0- GUCUUACCAGACAAAGUUAGA -21
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Mature sequence

Aca-Mir-8-P3a_3p

MirBase accessionMIMAT0021957
Sequence
38- UAAUACUGUCUGGUAAUGCCGU -60
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