MirGeneDB ID | Spt-Mir-8-P3a |
---|---|
Family name | MIR-8 (all species) |
Seed | AAUACUG |
Species | Tuatara (Sphenodon punctatus) |
MiRBase ID | |
Paralogues | Spt-Mir-8-P1a Spt-Mir-8-P2a |
Orthologues | Aae-Mir-8 Aca-Mir-8-P3a Ami-Mir-8-P3a Asu-Mir-8 Bfl-Mir-8-P3 Bge-Mir-8 Bla-Mir-8-P3 Bpl-Mir-8 Bta-Mir-8-P3a Cbr-Mir-8 Cel-Mir-8 Cfa-Mir-8-P3a Cgi-Mir-8 Cli-Mir-8-P3a Cmi-Mir-8-P3a Cpi-Mir-8-P3a Cpo-Mir-8-P3a Csc-Mir-8 Cte-Mir-8 Dan-Mir-8 Dma-Mir-8 Dme-Mir-8 Dmo-Mir-8 Dno-Mir-8-P3a Dpu-Mir-8 Dre-Mir-8-P3a Dsi-Mir-8 Dya-Mir-8 Esc-Mir-8 Ete-Mir-8-P3a Gga-Mir-8-P3a Gja-Mir-8-P3a Gmo-Mir-8-P3a Hme-Mir-8 Hsa-Mir-8-P3a Isc-Mir-8 Lan-Mir-8 Lch-Mir-8-P3a Lgi-Mir-8 Loc-Mir-8-P3a Mal-Mir-8-P3a Mdo-Mir-8-P3a Mml-Mir-8-P3a Mmu-Mir-8-P3a Mun-Mir-8-P3a Npo-Mir-8 Oan-Mir-8-P3a Obi-Mir-8 Ocu-Mir-8-P3a Ovu-Mir-8 Pbv-Mir-8-P3a Pfl-Mir-8 Pmi-Mir-8 Rno-Mir-8-P3a Sha-Mir-8-P3a Sko-Mir-8 Spu-Mir-8 Sto-Mir-8-P3a Tca-Mir-8 Tni-Mir-8-P3a Xla-Mir-8-P3a1 Xla-Mir-8-P3a2 Xtr-Mir-8-P3a |
Node of Origin (locus) | Vertebrata |
Node of Origin (family) | Bilateria |
Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01009251.1: 391815-391873 [-] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | UUCCAUAUGUUUAAAUGCCUGCUGACCGGUGUCUUACCAGACAAAGUUAGAUCUAGCUAUUUCUGUCUAAUACUGUCUGGUAAUGCCGUCGAUCGCAUCGGCAAAAUCUUCGUCUUGAAGet precursor sequence |
Structure | 10 20 30 40 50 UUCCAUAUGUUUAAAUG- -- ---| C CU AA UCUAGC CC UGC UGAC GGUGU UACCAGACA GUUAGA U GG ACG GCUG CCGUA AUGGUCUGU UAAUCU A AAGUUCUGCUUCUAAAAC CU CUA^ - -- CA GUCUUU 110 100 90 80 70 60 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | No |
Star sequence | Spt-Mir-8-P3a_5p* (predicted) |
mirBase accession | None |
Sequence |
0- GUCUUACCAGACAAAGUUAGA -21
Get sequence
|
Mature sequence | Spt-Mir-8-P3a_3p (predicted) |
mirBase accession | None |
Sequence |
37- UAAUACUGUCUGGUAAUGCCGU -59
Get sequence
|