MirGeneDB ID | Cmi-Mir-8-P3a |
Family name |
MIR-8 (all species) |
Seed |
AAUACUG |
Species |
Australian ghostshark (Callorhinchus milii) |
MiRBase ID |
|
Paralogues |
Cmi-Mir-8-P1a
Cmi-Mir-8-P2a
|
Orthologues |
Aae-Mir-8
Aca-Mir-8-P3a
Ami-Mir-8-P3a
Asu-Mir-8
Bfl-Mir-8-P3
Bge-Mir-8
Bla-Mir-8-P3
Bpl-Mir-8
Bta-Mir-8-P3a
Cbr-Mir-8
Cel-Mir-8
Cfa-Mir-8-P3a
Cgi-Mir-8
Cli-Mir-8-P3a
Cpi-Mir-8-P3a
Cpo-Mir-8-P3a
Csc-Mir-8
Cte-Mir-8
Dan-Mir-8
Dma-Mir-8
Dme-Mir-8
Dmo-Mir-8
Dno-Mir-8-P3a
Dpu-Mir-8
Dre-Mir-8-P3a
Dsi-Mir-8
Dya-Mir-8
Esc-Mir-8
Ete-Mir-8-P3a
Gga-Mir-8-P3a
Gja-Mir-8-P3a
Gmo-Mir-8-P3a
Hme-Mir-8
Hsa-Mir-8-P3a
Isc-Mir-8
Lan-Mir-8
Lch-Mir-8-P3a
Lgi-Mir-8
Loc-Mir-8-P3a
Mal-Mir-8-P3a
Mdo-Mir-8-P3a
Mml-Mir-8-P3a
Mmu-Mir-8-P3a
Mun-Mir-8-P3a
Npo-Mir-8
Oan-Mir-8-P3a
Obi-Mir-8
Ocu-Mir-8-P3a
Ovu-Mir-8
Pbv-Mir-8-P3a
Pfl-Mir-8
Pmi-Mir-8
Rno-Mir-8-P3a
Sha-Mir-8-P3a
Sko-Mir-8
Spt-Mir-8-P3a
Spu-Mir-8
Sto-Mir-8-P3a
Tca-Mir-8
Tni-Mir-8-P3a
Xla-Mir-8-P3a1
Xla-Mir-8-P3a2
Xtr-Mir-8-P3a
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Bilateria
|
Genome context (GCA_000165045.2_Callorhinchus_milii-6.1.3) |
KI636030.1: 458844-458902 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GUUAUCCAAGGUGGCUGCAUGUUGAUUGACGUCUUACCAGGCAAGGUUAGAUAUAGCUACUUCAGUCUAAUACUGUCUGGUAAUGCCGUUGAUCUCGUGUCAUAAGUUCUACACCUUGG
Get precursor sequence
|
Structure | 10 20 30 40 50
GUUAUCCAAGGUGGCUG---| UU UG - C AG UAUAGC
CAUG GAU ACG U UUACCAGGCA GUUAGA U
GUGC CUA UGC G AAUGGUCUGU UAAUCU A
GGUUCCACAUCUUGAAUACU^ U- GU C U CA GACUUC
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
Bl |
Br |
Ey |
Gi |
Gl |
He |
In |
Ki |
Li |
Mu |
Ov |
Pa |
Sk |
Sp |
Te |
Ut |
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Star sequence |
Cmi-Mir-8-P3a_5p* |
mirBase accession | None |
Sequence |
0- GUCUUACCAGGCAAGGUUAGA -21
Get sequence
|
Mature sequence |
Cmi-Mir-8-P3a_3p |
mirBase accession | None |
Sequence |
37- UAAUACUGUCUGGUAAUGCCGU -59
Get sequence
|