Mir-8-P3a

MirGeneDB ID

Bta-Mir-8-P3a

Family name

MIR-8 (all species)

Seed

AAUACUG

Species

Cow (Bos taurus)

MiRBase ID

bta-mir-429

Paralogues

Bta-Mir-8-P1a Bta-Mir-8-P1b Bta-Mir-8-P2a Bta-Mir-8-P2b

Orthologues

Aae-Mir-8 Aca-Mir-8-P3a Ami-Mir-8-P3a Asu-Mir-8 Bfl-Mir-8-P3 Bge-Mir-8 Bla-Mir-8-P3 Bpl-Mir-8 Cbr-Mir-8 Cel-Mir-8 Cfa-Mir-8-P3a Cgi-Mir-8 Cli-Mir-8-P3a Cmi-Mir-8-P3a Cpi-Mir-8-P3a Cpo-Mir-8-P3a Csc-Mir-8 Cte-Mir-8 Dan-Mir-8 Dma-Mir-8 Dme-Mir-8 Dmo-Mir-8 Dno-Mir-8-P3a Dpu-Mir-8 Dre-Mir-8-P3a Dsi-Mir-8 Dya-Mir-8 Esc-Mir-8 Ete-Mir-8-P3a Gga-Mir-8-P3a Gja-Mir-8-P3a Gmo-Mir-8-P3a Hme-Mir-8 Hsa-Mir-8-P3a Isc-Mir-8 Lan-Mir-8 Lch-Mir-8-P3a Lgi-Mir-8 Loc-Mir-8-P3a Mal-Mir-8-P3a Mdo-Mir-8-P3a Mml-Mir-8-P3a Mmu-Mir-8-P3a Mun-Mir-8-P3a Npo-Mir-8 Oan-Mir-8-P3a Obi-Mir-8 Ocu-Mir-8-P3a Ovu-Mir-8 Pbv-Mir-8-P3a Pfl-Mir-8 Pmi-Mir-8 Rno-Mir-8-P3a Sha-Mir-8-P3a Sko-Mir-8 Spt-Mir-8-P3a Spu-Mir-8 Sto-Mir-8-P3a Tca-Mir-8 Tni-Mir-8-P3a Xla-Mir-8-P3a1 Xla-Mir-8-P3a2 Xtr-Mir-8-P3a

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Bilateria

Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)

NC_037343.1: 51321456-51321513 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-8-P3a)

Mir-8-P3a NC_037343.1: 51321456-51321513 [-] UCSC Ensembl
Mir-8-P2a NC_037343.1: 51322692-51322752 [-] UCSC Ensembl
Mir-8-P1a NC_037343.1: 51323347-51323405 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GACUGCCUGCACCAAAGCCUGCCGAUGGGCGUCUUACCAGACACGGUUAGAUCUGGUCCUUCUGUCUAAUACUGUCUGGUAAUGCCGUCCAUCCCCGGCCUCAUCACCGCCACAGGAG

Get precursor sequence

Structure

        10        20           30         40        50        
GACUGCCUGCACCAAAGCCU   ---       -| C          CG      UCUGGU 
                    GCC   GAUGGGC GU UUACCAGACA  GUUAGA      \
                    CGG   CUACCUG CG AAUGGUCUGU  UAAUCU      C
GAGGACACCGCCACUACUC-   CCC       C^ U          CA      GUCUUC 
      110       100         90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Cd	Fe	Bo	Br	Ce	Co	Co	De	He	Hy	Ir	Ki	La	Lo	No	Op	Or	Pe	Re	Su	Te

Star sequence

Bta-Mir-8-P3a_5p*

mirBase accession

None

Sequence

0- GUCUUACCAGACACGGUUAGA -21

Get sequence

Mature sequence

Bta-Mir-8-P3a_3p

mirBase accession

MIMAT0009315

Sequence

36- UAAUACUGUCUGGUAAUGCCGU -58

Get sequence

Proposed targets

TargetScanVert: bta-miR-429