MirGeneDB 2.1

MirGeneDB ID

Bta-Mir-8-P2b

Family name MIR-8 (all species)
Seed AACACUG
Species Cow (Bos taurus)
MiRBase ID bta-mir-141
Paralogues Bta-Mir-8-P1a  Bta-Mir-8-P1b  Bta-Mir-8-P2a  Bta-Mir-8-P3a 
Orthologues Aae-Mir-8  Asu-Mir-8  Bfl-Mir-8-P2  Bge-Mir-8  Bla-Mir-8-P2  Bpl-Mir-8  Cbr-Mir-8  Cel-Mir-8  Cfa-Mir-8-P2b  Cgi-Mir-8  Cin-Mir-8-P2  Cpo-Mir-8-P2b  Csc-Mir-8  Cte-Mir-8  Dan-Mir-8  Dma-Mir-8  Dme-Mir-8  Dmo-Mir-8  Dno-Mir-8-P2b  Dpu-Mir-8  Dre-Mir-8-P2b  Dsi-Mir-8  Dya-Mir-8  Esc-Mir-8  Ete-Mir-8-P2b  Hme-Mir-8  Hsa-Mir-8-P2b  Isc-Mir-8  Lan-Mir-8  Lgi-Mir-8  Mdo-Mir-8-P2b  Mml-Mir-8-P2b  Mmu-Mir-8-P2b  Npo-Mir-8  Oan-Mir-8-P2b  Obi-Mir-8  Ocu-Mir-8-P2b  Ovu-Mir-8  Pfl-Mir-8  Pmi-Mir-8  Rno-Mir-8-P2b  Sha-Mir-8-P2b  Sko-Mir-8  Spu-Mir-8  Tca-Mir-8 
Node of Origin (locus) Vertebrata
Node of Origin (family) Bilateria
Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)
NC_037332.1: 103498836-103498900 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-8-P2b)
Mir-8-P2b NC_037332.1: 103498836-103498900 [-] UCSC Ensembl
Mir-8-P1b NC_037332.1: 103499259-103499321 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGCGUGGAUGUCUGUGACCGGCUCUGGGUCCAUCUUCCAGCACAGUGUUGGAUGGUCUAAUGGUGAAGCUCCUAACACUGUCUGGUAAAGAUGGCCCCCGGCUGGUGCCCUCGGCAAUGACCUUC
Get precursor sequence
Structure
        10           20        30          40        50        60 
AGCGUGGAUGUCUGUGA---      CU   U       --|   C          AUGGUCUAA 
                    CCGGCU  GGG CCAUCUU  CCAG ACAGUGUUGG         U
                    GGUCGG  CCC GGUAGAA  GGUC UGUCACAAUC         G
CUUCCAGUAACGGCUCCCGU      CC   -       AU^   -          CUCGAAGUG 
   120       110       100         90         80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ad Cd Fe Bo Br Ce Co Co De He Hy Ir Ki La Lo No Op Or Pe Re Su Te
Star sequence

Bta-Mir-8-P2b_5p*

mirBase accessionNone
Sequence
0- CAUCUUCCAGCACAGUGUUGGA -22
Get sequence
Mature sequence

Bta-Mir-8-P2b_3p

mirBase accessionMIMAT0009232
Sequence
42- UAACACUGUCUGGUAAAGAUGGC -65
Get sequence
Proposed targets TargetScanVert: bta-miR-141