MirGeneDB ID | Mdo-Mir-8-P2b |
Family name |
MIR-8 (all species) |
Species |
Gray short-tailed opossum (Monodelphis domestica) |
MiRBase ID |
mdo-mir-141
|
Paralogues |
Mdo-Mir-8-P1a
Mdo-Mir-8-P1b
Mdo-Mir-8-P2a
Mdo-Mir-8-P3a
|
Orthologues |
Aae-Mir-8
Aga-Mir-8
Agr-Mir-8
Asu-Mir-8
Bfl-Mir-8-P2
Bge-Mir-8
Bko-Mir-8
Bla-Mir-8-P2
Bpl-Mir-8
Bta-Mir-8-P2b
Cbr-Mir-8
Cel-Mir-8
Cfa-Mir-8-P2b
Cin-Mir-8-P2
Cja-Mir-8-P2b
Cpo-Mir-8-P2b
Csc-Mir-8
Cte-Mir-8
Dan-Mir-8
Dgr-Mir-8
Dlo-Mir-8
Dma-Mir-8
Dme-Mir-8
Dmo-Mir-8
Dno-Mir-8-P2b
Dpu-Mir-8
Dre-Mir-8-P2b
Dsi-Mir-8
Dya-Mir-8
Eba-Mir-8
Eca-Mir-8-P2b
Egr-Mir-8
Esc-Mir-8
Ete-Mir-8-P2b
Gpa-Mir-8
Gsa-Mir-8
Hme-Mir-8
Hru-Mir-8
Hsa-Mir-8-P2b
Isc-Mir-8
Laf-Mir-8-P2b
Lan-Mir-8
Lgi-Mir-8
Lhy-Mir-8
Llo-Mir-8
Mgi-Mir-8
Mml-Mir-8-P2b
Mmr-Mir-8-P2b
Mmu-Mir-8-P2b
Mom-Mir-8
Npo-Mir-8
Oan-Mir-8-P2b
Obi-Mir-8
Ocu-Mir-8-P2b
Ofu-Mir-8
Ovu-Mir-8
Pab-Mir-8-P2b
Pau-Mir-8
Pca-Mir-8
Pdu-Mir-8
Pfl-Mir-8
Pmi-Mir-8
Pve-Mir-8
Rno-Mir-8-P2b
Rph-Mir-8
Sha-Mir-8-P2b
Sko-Mir-8
Sma-Mir-8
Snu-Mir-8
Spu-Mir-8
Tca-Mir-8
Tur-Mir-8
War-Mir-8
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Nephrozoa
|
Genome context (monDom5_add) |
8: 108475865-108475921 [+]
UCSC
Ensembl
|
Clustered miRNAs (< 50kb from Mir-8-P2b) |
Mir-8-P1b
8: 108475452-108475514 [+]
UCSC
Ensembl
Mir-8-P2b
8: 108475865-108475921 [+]
UCSC
Ensembl
|
Seed |
AACACUG |
Precursor (pre-Mir +30nt flank) |
UGGAUGUGCCCAGCUGGCCAGCUCUGGGGCCAUCUUCCAGUACAGUGGUGGAUGGUGAAGCUUCUAACACUGUCUGGUAAAGAUGCCCUCCGGGUUGGUUCUCCCUUCGACGACUUU
Get precursor sequence
|
Structure | 10 20 30 40 50
UGGAUGUGCCCAGCUGG-- U C --| U G UGGU
CCAGCUC GGGG CAUCUU CCAG ACAGUG UGGA G
GGUUGGG CUCC GUAGAA GGUC UGUCAC AUCU A
UUUCAGCAGCUUCCCUCUU C C AU^ - A UCGA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Mdo-Mir-8-P2b_5p* |
mirBase accession | MIMAT0026695 |
Sequence |
0- CAUCUUCCAGUACAGUGGUGGA -22
Get sequence
|
Proposed targets |
TargetScanVert: mdo-miR-141-5p
|
Mature sequence |
Mdo-Mir-8-P2b_3p |
mirBase accession | MIMAT0004151 |
Sequence |
34- UAACACUGUCUGGUAAAGAUGCC -57
Get sequence
|
Proposed targets |
TargetScanVert: mdo-miR-141-3p
|