Mir-8-P1b

MirGeneDB ID

Mdo-Mir-8-P1b

Family name

MIR-8 (all species)

Species

Gray short-tailed opossum (Monodelphis domestica)

MiRBase ID

mdo-mir-200c

Paralogues

Mdo-Mir-8-P1a Mdo-Mir-8-P2a Mdo-Mir-8-P2b Mdo-Mir-8-P3a

Orthologues

Aae-Mir-8 Aga-Mir-8 Agr-Mir-8 Asu-Mir-8 Bfl-Mir-8-P1-v1 Bge-Mir-8 Bko-Mir-8 Bla-Mir-8-P1 Bpl-Mir-8 Bta-Mir-8-P1b Cbr-Mir-8 Cel-Mir-8 Cfa-Mir-8-P1b Cin-Mir-8-P1 Cja-Mir-8-P1b Cpo-Mir-8-P1b Csc-Mir-8 Cte-Mir-8 Dan-Mir-8 Dgr-Mir-8 Dlo-Mir-8 Dma-Mir-8 Dme-Mir-8 Dmo-Mir-8 Dpu-Mir-8 Dre-Mir-8-P1b Dsi-Mir-8 Dya-Mir-8 Eba-Mir-8 Eca-Mir-8-P1b Egr-Mir-8 Esc-Mir-8 Ete-Mir-8-P1b Gpa-Mir-8 Gsa-Mir-8 Hme-Mir-8 Hru-Mir-8 Hsa-Mir-8-P1b Isc-Mir-8 Laf-Mir-8-P1b Lan-Mir-8 Lch-Mir-8-P1b Lgi-Mir-8 Lhy-Mir-8 Llo-Mir-8 Mgi-Mir-8 Mml-Mir-8-P1b Mmr-Mir-8-P1b Mmu-Mir-8-P1b Mom-Mir-8 Neu-Mir-8-P1b Npo-Mir-8 Oan-Mir-8-P1b Obi-Mir-8 Ocu-Mir-8-P1b Ofu-Mir-8 Ovu-Mir-8 Pab-Mir-8-P1b Pau-Mir-8 Pca-Mir-8 Pdu-Mir-8 Pfl-Mir-8 Pmi-Mir-8 Pve-Mir-8 Rno-Mir-8-P1b Rph-Mir-8 Sha-Mir-8-P1b Sko-Mir-8 Sma-Mir-8 Snu-Mir-8 Spu-Mir-8 Tca-Mir-8 Tur-Mir-8 War-Mir-8

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Nephrozoa

Genome context
(monDom5_add)

8: 108475452-108475514 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-8-P1b)

Mir-8-P1b 8: 108475452-108475514 [+] UCSC Ensembl
Mir-8-P2b 8: 108475865-108475921 [+] UCSC Ensembl

Seed

AAUACUG

Precursor
(pre-Mir +30nt flank)

CUCGAGUGCGGCUGGCCGGGACUGGCGCCCCAUCUUACCCAGCAGUGUUUGGGUGCCGCUCGGGAGUCUCUAAUACUGCCGGGUAAUGAUGGAGGUCCUUUCCUCAUGACGCCUCCCAAUGCC

Get precursor sequence

Structure

        10          20         30         40        50        60
CUCGAGUGCGGCUGGCC--    CU  C   -     -|     A        U  GUGCCGC 
                   GGGA  GG GCC CCAUC UUACCC GCAGUGUU GG       U
                   UCCU  CC UGG GGUAG AAUGGG CGUCAUAA CU       C
CCGUAACCCUCCGCAGUAC    UU  -   A     U^     C        U  CUGAGGG 
 120       110       100         90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Br	Ce	He	Ki	Te

Star sequence

Mdo-Mir-8-P1b_5p*

mirBase accession

MIMAT0026694

Sequence

0- CAUCUUACCCAGCAGUGUUUGG -22

Get sequence

Proposed targets

TargetScanVert: mdo-miR-200c-5p

Mature sequence

Mdo-Mir-8-P1b_3p

mirBase accession

MIMAT0004150

Sequence

40- UAAUACUGCCGGGUAAUGAUGGA -63

Get sequence

Proposed targets

TargetScanVert: mdo-miR-200c-3p