Mir-8-P1b

MirGeneDB ID

Dre-Mir-8-P1b

Family name

MIR-8 (all species)

Species

Zebrafish (Danio rerio)

MiRBase ID

dre-mir-200c

Paralogues

Dre-Mir-8-P1a Dre-Mir-8-P2a Dre-Mir-8-P2b Dre-Mir-8-P3a Dre-Mir-8-P3b

Orthologues

Aae-Mir-8 Aga-Mir-8 Agr-Mir-8 Asu-Mir-8 Bfl-Mir-8-P1-v1 Bge-Mir-8 Bko-Mir-8 Bla-Mir-8-P1 Bpl-Mir-8 Bta-Mir-8-P1b Cbr-Mir-8 Cel-Mir-8 Cfa-Mir-8-P1b Cin-Mir-8-P1 Cja-Mir-8-P1b Cpo-Mir-8-P1b Csc-Mir-8 Cte-Mir-8 Dan-Mir-8 Dgr-Mir-8 Dlo-Mir-8 Dma-Mir-8 Dme-Mir-8 Dmo-Mir-8 Dpu-Mir-8 Dsi-Mir-8 Dya-Mir-8 Eba-Mir-8 Eca-Mir-8-P1b Egr-Mir-8 Esc-Mir-8 Ete-Mir-8-P1b Gpa-Mir-8 Gsa-Mir-8 Hme-Mir-8 Hru-Mir-8 Hsa-Mir-8-P1b Isc-Mir-8 Laf-Mir-8-P1b Lan-Mir-8 Lch-Mir-8-P1b Lgi-Mir-8 Lhy-Mir-8 Llo-Mir-8 Mdo-Mir-8-P1b Mgi-Mir-8 Mml-Mir-8-P1b Mmr-Mir-8-P1b Mmu-Mir-8-P1b Mom-Mir-8 Neu-Mir-8-P1b Npo-Mir-8 Oan-Mir-8-P1b Obi-Mir-8 Ocu-Mir-8-P1b Ofu-Mir-8 Ovu-Mir-8 Pab-Mir-8-P1b Pau-Mir-8 Pca-Mir-8 Pdu-Mir-8 Pfl-Mir-8 Pmi-Mir-8 Pve-Mir-8 Rno-Mir-8-P1b Rph-Mir-8 Sha-Mir-8-P1b Sko-Mir-8 Sma-Mir-8 Snu-Mir-8 Spu-Mir-8 Tca-Mir-8 Tur-Mir-8 War-Mir-8

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Nephrozoa

Genome context
(danRer11)

chr6: 40656216-40656274 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-8-P1b)

Mir-8-P3b chr6: 40653151-40653208 [-] UCSC Ensembl
Mir-8-P2b chr6: 40656013-40656073 [-] UCSC Ensembl
Mir-8-P1b chr6: 40656216-40656274 [-] UCSC Ensembl

Seed

AAUACUG

Precursor
(pre-Mir +30nt flank)

AUUUGGGAACGGACAAUGGAUGCCUGGCUCCAUCUUACAAGGCAGUUUUGGAUGUUAUAUCUUCUCUAAUACUGCCUGGUAAUGAUGCAGAUGGUCAUCUAGAGGCAACUUUGCAUCUG

Get precursor sequence

Structure

        10          20         30         40        50        
AUUUGGGAACGGACAAU--     -| UGG  C    -    A       U     UGUUA 
                   GGAUG CC   CU CAUC UUAC AGGCAGU UUGGA     U
                   UCUAC GG   GA GUAG AAUG UCCGUCA AAUCU     A
GUCUACGUUUCAACGGAGA     U^ UA-  C    U    G       U     CUUCU 
       110       100         90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17), UGUG in loop

Tissue expression

Br	Br	Em	Ey	Gu	Gu	He	Li	Li	Ov	Te

Star sequence

Dre-Mir-8-P1b_5p*

mirBase accession

MIMAT0031986

Sequence

0- CAUCUUACAAGGCAGUUUUGGA -22

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Mature sequence

Dre-Mir-8-P1b_3p

mirBase accession

MIMAT0001863

Sequence

36- UAAUACUGCCUGGUAAUGAUGCA -59

Get sequence

Proposed targets

TargetScanFish: dre-miR-200c