MirGeneDB 3.0
MirGeneDB ID

Rno-Mir-8-P2b

Family name MIR-8 (all species)
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-141
Paralogues Rno-Mir-8-P1a  Rno-Mir-8-P1b  Rno-Mir-8-P2a  Rno-Mir-8-P3a 
Orthologues Aae-Mir-8  Aga-Mir-8  Agr-Mir-8  Asu-Mir-8  Bfl-Mir-8-P2  Bge-Mir-8  Bko-Mir-8  Bla-Mir-8-P2  Bpl-Mir-8  Bta-Mir-8-P2b  Cbr-Mir-8  Cel-Mir-8  Cfa-Mir-8-P2b  Cin-Mir-8-P2  Cja-Mir-8-P2b  Cpo-Mir-8-P2b  Csc-Mir-8  Cte-Mir-8  Dan-Mir-8  Dgr-Mir-8  Dlo-Mir-8  Dma-Mir-8  Dme-Mir-8  Dmo-Mir-8  Dno-Mir-8-P2b  Dpu-Mir-8  Dre-Mir-8-P2b  Dsi-Mir-8  Dya-Mir-8  Eba-Mir-8  Eca-Mir-8-P2b  Egr-Mir-8  Esc-Mir-8  Ete-Mir-8-P2b  Gpa-Mir-8  Gsa-Mir-8  Hme-Mir-8  Hru-Mir-8  Hsa-Mir-8-P2b  Isc-Mir-8  Laf-Mir-8-P2b  Lan-Mir-8  Lgi-Mir-8  Lhy-Mir-8  Llo-Mir-8  Mdo-Mir-8-P2b  Mgi-Mir-8  Mml-Mir-8-P2b  Mmr-Mir-8-P2b  Mmu-Mir-8-P2b  Mom-Mir-8  Npo-Mir-8  Oan-Mir-8-P2b  Obi-Mir-8  Ocu-Mir-8-P2b  Ofu-Mir-8  Ovu-Mir-8  Pab-Mir-8-P2b  Pau-Mir-8  Pca-Mir-8  Pdu-Mir-8  Pfl-Mir-8  Pmi-Mir-8  Pve-Mir-8  Rph-Mir-8  Sha-Mir-8-P2b  Sko-Mir-8  Sma-Mir-8  Snu-Mir-8  Spu-Mir-8  Tca-Mir-8  Tur-Mir-8  War-Mir-8 
Node of Origin (locus) Vertebrata
Node of Origin (family) Nephrozoa
Genome context
(rn6)		 chr4: 157236360-157236424 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-8-P2b)		 Mir-8-P2b chr4: 157236360-157236424 [-] UCSC Ensembl
Mir-8-P1b chr4: 157236788-157236850 [-] UCSC Ensembl
Seed AACACUG
Precursor
(pre-Mir +30nt flank)		 
AGAUCAAUUUAUGUUGGCUGACUCUGAGUCCAUCUUCCAGUGCAGUGUUGGAUGGUUGAAGUACGAAGCUCCUAACACUGUCUGGUAAAGAUGGCCCCCGGGUCAGUUCCCUCAGCAGUGACCUU
Get precursor sequence
Structure
        10          20        30          40        50        60 
AGAUCAAUUUAUGUUGG--       UGAGU       --|   U          AUGGUUGAA 
                   CUGACUC     CCAUCUU  CCAG GCAGUGUUGG         G
                   GACUGGG     GGUAGAA  GGUC UGUCACAAUC         U
UUCCAGUGACGACUCCCUU       CCCCC       AU^   -          CUCGAAGCA 
   120       110       100        90         80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Dr Dr Ad Bi Bi Bi Bi Br Br Br Br Ce Ce Ce Ce Co Co Co Co Du Du Du Du Fa He He He Hi Hi Il Il Je Je Ki Ki Ki Ki Ki La Li Li Li Li Li Li Lu Me Me Mu Ov Pa Pa Pa Sk Sm So So So So Sp St St St St Te Te Th Ut Wh
Star sequence

Rno-Mir-8-P2b_5p*
mirBase accessionMIMAT0017128
Sequence 
0- CAUCUUCCAGUGCAGUGUUGGA -22
Get sequence
Proposed targets TargetScanVert: rno-miR-141-5p
miRDB: MIMAT0017128
Mature sequence

Rno-Mir-8-P2b_3p
mirBase accessionMIMAT0000846
Sequence 
42- UAACACUGUCUGGUAAAGAUGGC -65
Get sequence
Proposed targets microrna.org: MIMAT0000846
TargetScanVert: rno-miR-141-3p
miRDB: MIMAT0000846