Mir-8-P1a

MirGeneDB ID

Rno-Mir-8-P1a

Family name

MIR-8 (all species)

Seed

AAUACUG

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-200b

Paralogues

Rno-Mir-8-P1b Rno-Mir-8-P2a Rno-Mir-8-P2b Rno-Mir-8-P3a

Orthologues

Aae-Mir-8 Aca-Mir-8-P1a Ami-Mir-8-P1a Asu-Mir-8 Bfl-Mir-8-P1-v1 Bfl-Mir-8-P1-v2 Bge-Mir-8 Bla-Mir-8-P1 Bpl-Mir-8 Bta-Mir-8-P1a Cbr-Mir-8 Cel-Mir-8 Cfa-Mir-8-P1a Cgi-Mir-8 Cin-Mir-8-P1 Cli-Mir-8-P1a Cmi-Mir-8-P1a Cpi-Mir-8-P1a Cpo-Mir-8-P1a Csc-Mir-8 Cte-Mir-8 Dan-Mir-8 Dma-Mir-8 Dme-Mir-8 Dmo-Mir-8 Dno-Mir-8-P1a Dpu-Mir-8 Dre-Mir-8-P1a Dsi-Mir-8 Dya-Mir-8 Esc-Mir-8 Ete-Mir-8-P1a Gga-Mir-8-P1a Gja-Mir-8-P1a Gmo-Mir-8-P1a Hme-Mir-8 Hsa-Mir-8-P1a Isc-Mir-8 Lan-Mir-8 Lch-Mir-8-P1a Lgi-Mir-8 Loc-Mir-8-P1a Mal-Mir-8-P1a Mdo-Mir-8-P1a Mml-Mir-8-P1a Mmu-Mir-8-P1a Mun-Mir-8-P1a Npo-Mir-8 Oan-Mir-8-P1a Obi-Mir-8 Ocu-Mir-8-P1a Ovu-Mir-8 Pbv-Mir-8-P1a Pfl-Mir-8 Pmi-Mir-8 Sha-Mir-8-P1a Sko-Mir-8 Spt-Mir-8-P1a Spu-Mir-8 Sto-Mir-8-P1a Tca-Mir-8 Tgu-Mir-8-P1a Tni-Mir-8-P1a Xla-Mir-8-P1a1 Xla-Mir-8-P1a2 Xtr-Mir-8-P1a

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Bilateria

Genome context
(rn6)

chr5: 173490160-173490218 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-8-P1a)

Mir-8-P3a chr5: 173488342-173488400 [-] UCSC Ensembl
Mir-8-P2a chr5: 173489379-173489439 [-] UCSC Ensembl
Mir-8-P1a chr5: 173490160-173490218 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GCCUCCAUAUCCAACUUGGGCAGCCGUGGCCAUCUUACUGGGCAGCAUUGGAUAGUGUCUGAUCUCUAAUACUGCCUGGUAAUGAUGACGGCGGAGCCCUGCACGCAGCAAUGGAGCCG

Get precursor sequence

Structure

        10           20          30         40        50        
GCCUCCAUAUCCAACUU---    A--|    GGC    -    UG     C      UAGUG 
                    GGGC   GCCGU   CAUC UUAC  GGCAG AUUGGA     U
                    CCCG   CGGCA   GUAG AAUG  CCGUC UAAUCU     C
GCCGAGGUAACGACGCACGU    AGG^    ---    U    GU     A      CUAGU 
       110       100        90           80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Ad	Ad	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Dr	Dr	Du	Du	Du	Du	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Li	Li	Li	Li	Me	Me	Mu	Mu	Mu	Mu	Mu	Mu	Mu	Mu	Ov	Pa	Pa	St	St	St	Te	Ut	Wh	Br	Fa	He	Ki	La	Li	Li	Lu	Mu	Pa	Sk	Sm	Sp	St	Te	Th

Star sequence

Rno-Mir-8-P1a_5p*

mirBase accession

MIMAT0017152

Sequence

0- CAUCUUACUGGGCAGCAUUGGA -22

Get sequence

Proposed targets

TargetScanVert: rno-miR-200b-5p
miRDB: MIMAT0017152

Mature sequence

Rno-Mir-8-P1a_3p

mirBase accession

MIMAT0000875

Sequence

36- UAAUACUGCCUGGUAAUGAUGAC -59

Get sequence

Proposed targets

microrna.org: MIMAT0000875
TargetScanVert: rno-miR-200b-3p
miRDB: MIMAT0000875