Mir-8-P1a

MirGeneDB ID

Hsa-Mir-8-P1a

Family name

MIR-8 (all species)

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-200b

Paralogues

Hsa-Mir-8-P1b Hsa-Mir-8-P2a Hsa-Mir-8-P2b Hsa-Mir-8-P3a

Orthologues

Aae-Mir-8 Aca-Mir-8-P1a Aga-Mir-8 Agr-Mir-8 Ami-Mir-8-P1a Asu-Mir-8 Bfl-Mir-8-P1-v1 Bge-Mir-8 Bko-Mir-8 Bla-Mir-8-P1 Bpl-Mir-8 Bta-Mir-8-P1a Cbr-Mir-8 Cel-Mir-8 Cfa-Mir-8-P1a Cin-Mir-8-P1 Cja-Mir-8-P1a Cli-Mir-8-P1a Cmi-Mir-8-P1a Cpi-Mir-8-P1a Cpo-Mir-8-P1a Csc-Mir-8 Cte-Mir-8 Dan-Mir-8 Dgr-Mir-8 Dlo-Mir-8 Dma-Mir-8 Dme-Mir-8 Dmo-Mir-8 Dno-Mir-8-P1a Dpu-Mir-8 Dre-Mir-8-P1a Dsi-Mir-8 Dya-Mir-8 Eba-Mir-8 Eca-Mir-8-P1a Eca-Mir-8-P1a-as Egr-Mir-8 Esc-Mir-8 Ete-Mir-8-P1a Gga-Mir-8-P1a Gja-Mir-8-P1a Gmo-Mir-8-P1a Gpa-Mir-8 Gsa-Mir-8 Hme-Mir-8 Hru-Mir-8 Isc-Mir-8 Laf-Mir-8-P1a Lan-Mir-8 Lch-Mir-8-P1a Lgi-Mir-8 Lhy-Mir-8 Llo-Mir-8 Loc-Mir-8-P1a Mal-Mir-8-P1a Mdo-Mir-8-P1a Mgi-Mir-8 Mml-Mir-8-P1a Mmr-Mir-8-P1a Mmu-Mir-8-P1a Mom-Mir-8 Mun-Mir-8-P1a Neu-Mir-8-P1a Npo-Mir-8 Oan-Mir-8-P1a Obi-Mir-8 Ocu-Mir-8-P1a Ofu-Mir-8 Ovu-Mir-8 Pab-Mir-8-P1a Pau-Mir-8 Pbv-Mir-8-P1a Pca-Mir-8 Pdu-Mir-8 Pfl-Mir-8 Pmi-Mir-8 Pve-Mir-8 Rno-Mir-8-P1a Rph-Mir-8 Sha-Mir-8-P1a Sko-Mir-8 Sma-Mir-8 Snu-Mir-8 Spt-Mir-8-P1a Spu-Mir-8 Sto-Mir-8-P1a Tca-Mir-8 Tgu-Mir-8-P1a Tni-Mir-8-P1a Tur-Mir-8 War-Mir-8 Xla-Mir-8-P1a1 Xla-Mir-8-P1a2 Xtr-Mir-8-P1a

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Nephrozoa

Genome context
(hg38)

chr1: 1167124-1167182 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-8-P1a)

Mir-8-P1a chr1: 1167124-1167182 [+] UCSC Ensembl
Mir-8-P2a chr1: 1167878-1167938 [+] UCSC Ensembl
Mir-8-P3a chr1: 1169020-1169076 [+] UCSC Ensembl

Seed

AAUACUG

Precursor
(pre-Mir +30nt flank)

GCCCCCGGACCCAGCUCGGGCAGCCGUGGCCAUCUUACUGGGCAGCAUUGGAUGGAGUCAGGUCUCUAAUACUGCCUGGUAAUGAUGACGGCGGAGCCCUGCACGCAGCGACCGGCCGA

Get precursor sequence

Structure

        10           20          30         40        50        
GCCCCCGGACCCAGCUC---    A--|    GGC    -    UG     C      UGGAG 
                    GGGC   GCCGU   CAUC UUAC  GGCAG AUUGGA     U
                    CCCG   CGGCA   GUAG AAUG  CCGUC UAAUCU     C
AGCCGGCCAGCGACGCACGU    AGG^    ---    U    GU     A      CUGGA 
       110       100        90           80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Dc	Dc	Dr	Dr	Xp	Xp	Bl	Br	Br	Ce	Ce	Co	Fo	He	Ki	Le	Li	Li	Lu	Pa	Pl	Pl	Sk	Sk	Sk	Sm	Sp	Sp	St	Te	Th	Ut

Star sequence

Hsa-Mir-8-P1a_5p*

mirBase accession

MIMAT0004571

Sequence

0- CAUCUUACUGGGCAGCAUUGGA -22

Get sequence

Proposed targets

microrna.org: MIMAT0004571
TargetScanVert: hsa-miR-200b-5p
TargetMiner: hsa-miR-200b-5p
miRDB: MIMAT0004571

Mature sequence

Hsa-Mir-8-P1a_3p

mirBase accession

MIMAT0000318

Sequence

36- UAAUACUGCCUGGUAAUGAUGAC -59

Get sequence

Proposed targets

microrna.org: MIMAT0000318
TargetScanVert: hsa-miR-200b-3p
TargetMiner: hsa-miR-200b-3p
miRDB: MIMAT0000318