MirGeneDB 2.1

MirGeneDB ID

Xla-Mir-8-P1a1

Family name MIR-8 (all species)
Seed AAUACUG
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-8-P1a2  Xla-Mir-8-P2a1  Xla-Mir-8-P2a2  Xla-Mir-8-P3a1  Xla-Mir-8-P3a2 
Orthologues Aae-Mir-8  Aca-Mir-8-P1a  Ami-Mir-8-P1a  Asu-Mir-8  Bfl-Mir-8-P1-v1  Bfl-Mir-8-P1-v2  Bge-Mir-8  Bla-Mir-8-P1  Bpl-Mir-8  Bta-Mir-8-P1a  Cbr-Mir-8  Cel-Mir-8  Cfa-Mir-8-P1a  Cgi-Mir-8  Cin-Mir-8-P1  Cli-Mir-8-P1a  Cmi-Mir-8-P1a  Cpi-Mir-8-P1a  Cpo-Mir-8-P1a  Csc-Mir-8  Cte-Mir-8  Dan-Mir-8  Dma-Mir-8  Dme-Mir-8  Dmo-Mir-8  Dno-Mir-8-P1a  Dpu-Mir-8  Dre-Mir-8-P1a  Dsi-Mir-8  Dya-Mir-8  Esc-Mir-8  Ete-Mir-8-P1a  Gga-Mir-8-P1a  Gja-Mir-8-P1a  Gmo-Mir-8-P1a  Hme-Mir-8  Hsa-Mir-8-P1a  Isc-Mir-8  Lan-Mir-8  Lch-Mir-8-P1a  Lgi-Mir-8  Loc-Mir-8-P1a  Mal-Mir-8-P1a  Mdo-Mir-8-P1a  Mml-Mir-8-P1a  Mmu-Mir-8-P1a  Mun-Mir-8-P1a  Npo-Mir-8  Oan-Mir-8-P1a  Obi-Mir-8  Ocu-Mir-8-P1a  Ovu-Mir-8  Pbv-Mir-8-P1a  Pfl-Mir-8  Pmi-Mir-8  Rno-Mir-8-P1a  Sha-Mir-8-P1a  Sko-Mir-8  Spt-Mir-8-P1a  Spu-Mir-8  Sto-Mir-8-P1a  Tca-Mir-8  Tgu-Mir-8-P1a  Tni-Mir-8-P1a  Xtr-Mir-8-P1a 
Node of Origin (locus) X. laevis
Node of Origin (family) Bilateria
Genome context
(GCF_001663975.1_XLA_v2)
NC_030736.1: 81491532-81491591 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-8-P1a1)
Mir-8-P3a1 NC_030736.1: 81487076-81487134 [-] UCSC Ensembl
Mir-8-P2a1 NC_030736.1: 81489807-81489867 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUACCCCUUUGGAUUCUGUGGCGCUAUUGCCAUCUUACUGGGCAGCAUUGGAUUAUGUCUAUGUUUCUAAUACUGCCUGGUAAUGAUGAUUAUGGCGUCCCACAUACAACGUGCUGUAAG
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Structure
        10          20        30         40        50         
AUACCCCUUUGGAUUCU-- U        UGC    -|   UG     C      UUAUGU 
                   G GGCGCUAU   CAUC UUAC  GGCAG AUUGGA      \
                   C CUGCGGUA   GUAG AAUG  CCGUC UAAUCU      C
GAAUGUCGUGCAACAUACA C        UUA    U^   GU     A      UUGUAU 
.       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Eg He Re St St St St
Star sequence

Xla-Mir-8-P1a1_5p*

mirBase accessionNone
Sequence
0- CAUCUUACUGGGCAGCAUUGGA -22
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Mature sequence

Xla-Mir-8-P1a1_3p

mirBase accessionNone
Sequence
37- UAAUACUGCCUGGUAAUGAUGAU -60
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