Mir-8-P1a

MirGeneDB ID

Gga-Mir-8-P1a

Family name

MIR-8 (all species)

Species

Chicken (Gallus gallus)

MiRBase ID

gga-mir-200b

Paralogues

Gga-Mir-8-P2a Gga-Mir-8-P3a

Orthologues

Aae-Mir-8 Aca-Mir-8-P1a Aga-Mir-8 Agr-Mir-8 Ami-Mir-8-P1a Asu-Mir-8 Bfl-Mir-8-P1-v1 Bge-Mir-8 Bko-Mir-8 Bla-Mir-8-P1 Bpl-Mir-8 Bta-Mir-8-P1a Cbr-Mir-8 Cel-Mir-8 Cfa-Mir-8-P1a Cin-Mir-8-P1 Cja-Mir-8-P1a Cli-Mir-8-P1a Cmi-Mir-8-P1a Cpi-Mir-8-P1a Cpo-Mir-8-P1a Csc-Mir-8 Cte-Mir-8 Dan-Mir-8 Dgr-Mir-8 Dlo-Mir-8 Dma-Mir-8 Dme-Mir-8 Dmo-Mir-8 Dno-Mir-8-P1a Dpu-Mir-8 Dre-Mir-8-P1a Dsi-Mir-8 Dya-Mir-8 Eba-Mir-8 Eca-Mir-8-P1a Eca-Mir-8-P1a-as Egr-Mir-8 Esc-Mir-8 Ete-Mir-8-P1a Gja-Mir-8-P1a Gmo-Mir-8-P1a Gpa-Mir-8 Gsa-Mir-8 Hme-Mir-8 Hru-Mir-8 Hsa-Mir-8-P1a Isc-Mir-8 Laf-Mir-8-P1a Lan-Mir-8 Lch-Mir-8-P1a Lgi-Mir-8 Lhy-Mir-8 Llo-Mir-8 Loc-Mir-8-P1a Mal-Mir-8-P1a Mdo-Mir-8-P1a Mgi-Mir-8 Mml-Mir-8-P1a Mmr-Mir-8-P1a Mmu-Mir-8-P1a Mom-Mir-8 Mun-Mir-8-P1a Neu-Mir-8-P1a Npo-Mir-8 Oan-Mir-8-P1a Obi-Mir-8 Ocu-Mir-8-P1a Ofu-Mir-8 Ovu-Mir-8 Pab-Mir-8-P1a Pau-Mir-8 Pbv-Mir-8-P1a Pca-Mir-8 Pdu-Mir-8 Pfl-Mir-8 Pmi-Mir-8 Pve-Mir-8 Rno-Mir-8-P1a Rph-Mir-8 Sha-Mir-8-P1a Sko-Mir-8 Sma-Mir-8 Snu-Mir-8 Spt-Mir-8-P1a Spu-Mir-8 Sto-Mir-8-P1a Tca-Mir-8 Tgu-Mir-8-P1a Tni-Mir-8-P1a Tur-Mir-8 War-Mir-8 Xla-Mir-8-P1a1 Xla-Mir-8-P1a2 Xtr-Mir-8-P1a

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Nephrozoa

Genome context
(Gallus_gallus.GRCg6a)

21: 2603411-2603470 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-8-P1a)

Mir-8-P3a 21: 2598575-2598633 [-] UCSC Ensembl
Mir-8-P2a 21: 2601082-2601142 [-] UCSC Ensembl
Mir-8-P1a 21: 2603411-2603470 [-] UCSC Ensembl

Seed

AAUACUG

Precursor
(pre-Mir +30nt flank)

UUGUAGACCAUGAUCCUGAGAUGCCAUUACCAUCUUACUGGGCAGCAUUGGAUGUUCUCUGUUUUUCUAAUACUGCCUGGUAAUGAUGAUUGUGGUGUUUCGUGCACAACGUGGAAAAGU

Get precursor sequence

Structure

        10          20        30         40        50         
UUGUAGACCAUGAUCCU--          UAC    -|   UG     C      UGUUCU 
                   GAGAUGCCAU   CAUC UUAC  GGCAG AUUGGA      \
                   CUUUGUGGUG   GUAG AAUG  CCGUC UAAUCU      C
UGAAAAGGUGCAACACGUG          UUA    U^   GU     A      UUUUGU 
.       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17), UGUG in loop

Tissue expression

Ad	Ad	Ad	Br	Br	Ce	Ce	Ce	Ce	Gg	He	He	Hy	Hy	Ki	Ki	Li	Li	Lu	Lu	Ov	Pr	Pr	Sc	Sc	Sp	Sp	Te

Star sequence

Gga-Mir-8-P1a_5p*

mirBase accession

MIMAT0026534

Sequence

0- CAUCUUACUGGGCAGCAUUGGA -22

Get sequence

Proposed targets

TargetScanVert: gga-miR-200b-5p
miRDB: MIMAT0026534

Mature sequence

Gga-Mir-8-P1a_3p

mirBase accession

MIMAT0001172

Sequence

37- UAAUACUGCCUGGUAAUGAUGAU -60

Get sequence

Proposed targets

TargetScanVert: gga-miR-200b-3p
miRDB: MIMAT0001172