MirGeneDB ID | Gga-Mir-8-P1a |
Family name |
MIR-8 (all species) |
Species |
Chicken (Gallus gallus) |
MiRBase ID |
gga-mir-200b
|
Paralogues |
Gga-Mir-8-P2a
Gga-Mir-8-P3a
|
Orthologues |
Aae-Mir-8
Aca-Mir-8-P1a
Aga-Mir-8
Agr-Mir-8
Ami-Mir-8-P1a
Asu-Mir-8
Bfl-Mir-8-P1-v1
Bge-Mir-8
Bko-Mir-8
Bla-Mir-8-P1
Bpl-Mir-8
Bta-Mir-8-P1a
Cbr-Mir-8
Cel-Mir-8
Cfa-Mir-8-P1a
Cin-Mir-8-P1
Cja-Mir-8-P1a
Cli-Mir-8-P1a
Cmi-Mir-8-P1a
Cpi-Mir-8-P1a
Cpo-Mir-8-P1a
Csc-Mir-8
Cte-Mir-8
Dan-Mir-8
Dgr-Mir-8
Dlo-Mir-8
Dma-Mir-8
Dme-Mir-8
Dmo-Mir-8
Dno-Mir-8-P1a
Dpu-Mir-8
Dre-Mir-8-P1a
Dsi-Mir-8
Dya-Mir-8
Eba-Mir-8
Eca-Mir-8-P1a
Eca-Mir-8-P1a-as
Egr-Mir-8
Esc-Mir-8
Ete-Mir-8-P1a
Gja-Mir-8-P1a
Gmo-Mir-8-P1a
Gpa-Mir-8
Gsa-Mir-8
Hme-Mir-8
Hru-Mir-8
Hsa-Mir-8-P1a
Isc-Mir-8
Laf-Mir-8-P1a
Lan-Mir-8
Lch-Mir-8-P1a
Lgi-Mir-8
Lhy-Mir-8
Llo-Mir-8
Loc-Mir-8-P1a
Mal-Mir-8-P1a
Mdo-Mir-8-P1a
Mgi-Mir-8
Mml-Mir-8-P1a
Mmr-Mir-8-P1a
Mmu-Mir-8-P1a
Mom-Mir-8
Mun-Mir-8-P1a
Neu-Mir-8-P1a
Npo-Mir-8
Oan-Mir-8-P1a
Obi-Mir-8
Ocu-Mir-8-P1a
Ofu-Mir-8
Ovu-Mir-8
Pab-Mir-8-P1a
Pau-Mir-8
Pbv-Mir-8-P1a
Pca-Mir-8
Pdu-Mir-8
Pfl-Mir-8
Pmi-Mir-8
Pve-Mir-8
Rno-Mir-8-P1a
Rph-Mir-8
Sha-Mir-8-P1a
Sko-Mir-8
Sma-Mir-8
Snu-Mir-8
Spt-Mir-8-P1a
Spu-Mir-8
Sto-Mir-8-P1a
Tca-Mir-8
Tgu-Mir-8-P1a
Tni-Mir-8-P1a
Tur-Mir-8
War-Mir-8
Xla-Mir-8-P1a1
Xla-Mir-8-P1a2
Xtr-Mir-8-P1a
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Nephrozoa
|
Genome context (Gallus_gallus.GRCg6a) |
21: 2603411-2603470 [-]
UCSC
Ensembl
|
Clustered miRNAs (< 50kb from Mir-8-P1a) |
Mir-8-P3a
21: 2598575-2598633 [-]
UCSC
Ensembl
Mir-8-P2a
21: 2601082-2601142 [-]
UCSC
Ensembl
Mir-8-P1a
21: 2603411-2603470 [-]
UCSC
Ensembl
|
Seed |
AAUACUG |
Precursor (pre-Mir +30nt flank) |
UUGUAGACCAUGAUCCUGAGAUGCCAUUACCAUCUUACUGGGCAGCAUUGGAUGUUCUCUGUUUUUCUAAUACUGCCUGGUAAUGAUGAUUGUGGUGUUUCGUGCACAACGUGGAAAAGU
Get precursor sequence
|
Structure | 10 20 30 40 50
UUGUAGACCAUGAUCCU-- UAC -| UG C UGUUCU
GAGAUGCCAU CAUC UUAC GGCAG AUUGGA \
CUUUGUGGUG GUAG AAUG CCGUC UAAUCU C
UGAAAAGGUGCAACACGUG UUA U^ GU A UUUUGU
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
Tissue expression
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Ad |
Ad |
Ad |
Br |
Br |
Ce |
Ce |
Ce |
Ce |
Gg |
He |
He |
Hy |
Hy |
Ki |
Ki |
Li |
Li |
Lu |
Lu |
Ov |
Pr |
Pr |
Sc |
Sc |
Sp |
Sp |
Te |
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Star sequence |
Gga-Mir-8-P1a_5p* |
mirBase accession | MIMAT0026534 |
Sequence |
0- CAUCUUACUGGGCAGCAUUGGA -22
Get sequence
|
Proposed targets |
TargetScanVert: gga-miR-200b-5p
miRDB: MIMAT0026534
|
Mature sequence |
Gga-Mir-8-P1a_3p |
mirBase accession | MIMAT0001172 |
Sequence |
37- UAAUACUGCCUGGUAAUGAUGAU -60
Get sequence
|
Proposed targets |
TargetScanVert: gga-miR-200b-3p
miRDB: MIMAT0001172
|