MirGeneDB ID | Loc-Mir-8-P2a |
Family name |
MIR-8 (all species) |
Seed |
AACACUG |
Species |
Spotted gar (Lepisosteus oculatus) |
MiRBase ID |
|
Paralogues |
Loc-Mir-8-P1a
Loc-Mir-8-P3a
|
Orthologues |
Aae-Mir-8
Aca-Mir-8-P2a
Ami-Mir-8-P2a
Asu-Mir-8
Bfl-Mir-8-P2
Bge-Mir-8
Bla-Mir-8-P2
Bpl-Mir-8
Bta-Mir-8-P2a
Cbr-Mir-8
Cel-Mir-8
Cfa-Mir-8-P2a
Cgi-Mir-8
Cin-Mir-8-P2
Cli-Mir-8-P2a
Cmi-Mir-8-P2a
Cpi-Mir-8-P2a
Cpo-Mir-8-P2a
Csc-Mir-8
Cte-Mir-8
Dan-Mir-8
Dma-Mir-8
Dme-Mir-8
Dmo-Mir-8
Dno-Mir-8-P2a
Dpu-Mir-8
Dre-Mir-8-P2a
Dsi-Mir-8
Dya-Mir-8
Esc-Mir-8
Ete-Mir-8-P2a
Gga-Mir-8-P2a
Gja-Mir-8-P2a
Gmo-Mir-8-P2a
Hme-Mir-8
Hsa-Mir-8-P2a
Isc-Mir-8
Lan-Mir-8
Lch-Mir-8-P2a
Lgi-Mir-8
Mal-Mir-8-P2a
Mdo-Mir-8-P2a
Mml-Mir-8-P2a
Mmu-Mir-8-P2a
Mun-Mir-8-P2a
Npo-Mir-8
Oan-Mir-8-P2a
Obi-Mir-8
Ocu-Mir-8-P2a
Ovu-Mir-8
Pbv-Mir-8-P2a
Pfl-Mir-8
Pmi-Mir-8
Rno-Mir-8-P2a
Sha-Mir-8-P2a
Sko-Mir-8
Spt-Mir-8-P2a
Spu-Mir-8
Sto-Mir-8-P2a
Tca-Mir-8
Tgu-Mir-8-P2a
Tni-Mir-8-P2a
Xla-Mir-8-P2a1
Xla-Mir-8-P2a2
Xtr-Mir-8-P2a
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Bilateria
|
Genome context (LepOcu1) |
LG25: 13733478-13733538 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CUGGCGAGGAUAGACAUGGCUCUCGAUGGACAUCUUACUAGACAGUGCUGGAUUGUACACCUGGGUUCUAACACUGUCUGGUAACGAUGUUUACAGGGUGACCCAAGGGCUGCCACACUCC
Get precursor sequence
|
Structure | 10 20 30 40 50
CUGGCGAGGAUAGACAU- CU- GA -| C UUGUAC
GG CUC UGGACAUC UUACUAGACAGUG UGGA A
CC GGG AUUUGUAG AAUGGUCUGUCAC AUCU C
CCUCACACCGUCGGGAAC AGU AC C^ A UGGGUC
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14) |
Tissue expression
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Br |
Br |
He |
He |
He |
He |
Ov |
Ov |
Ov |
Ov |
Te |
Te |
Te |
Te |
To |
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Star sequence |
Loc-Mir-8-P2a_5p* |
mirBase accession | None |
Sequence |
0- CAUCUUACUAGACAGUGCUGGA -22
Get sequence
|
Mature sequence |
Loc-Mir-8-P2a_3p |
mirBase accession | None |
Sequence |
38- UAACACUGUCUGGUAACGAUGUU -61
Get sequence
|