Mir-8-P3o1

MirGeneDB ID

Ebu-Mir-8-P3o1

Family name

MIR-8 (all species)

Species

Inshore hagfish (Eptatretus burgeri)

MiRBase ID

Paralogues

Ebu-Mir-8-P1o1 Ebu-Mir-8-P2o1

Orthologues

Aae-Mir-8 Aga-Mir-8 Agr-Mir-8 Asu-Mir-8 Bfl-Mir-8-P3 Bge-Mir-8 Bko-Mir-8 Bla-Mir-8-P3 Bpl-Mir-8 Cbr-Mir-8 Cel-Mir-8 Csc-Mir-8 Cte-Mir-8 Dan-Mir-8 Dgr-Mir-8 Dlo-Mir-8 Dma-Mir-8 Dme-Mir-8 Dmo-Mir-8 Dpu-Mir-8 Dsi-Mir-8 Dya-Mir-8 Eba-Mir-8 Egr-Mir-8 Esc-Mir-8 Gpa-Mir-8 Gsa-Mir-8 Hme-Mir-8 Hru-Mir-8 Isc-Mir-8 Lan-Mir-8 Lgi-Mir-8 Lhy-Mir-8 Llo-Mir-8 Mgi-Mir-8 Mom-Mir-8 Npo-Mir-8 Obi-Mir-8 Ofu-Mir-8 Ovu-Mir-8 Pau-Mir-8 Pca-Mir-8 Pdu-Mir-8 Pfl-Mir-8 Pmi-Mir-8 Pve-Mir-8 Rph-Mir-8 Sko-Mir-8 Sma-Mir-8 Snu-Mir-8 Spu-Mir-8 Tca-Mir-8 Tur-Mir-8 War-Mir-8

Node of Origin (locus)

E. burgeri

Node of Origin (family)

Nephrozoa

Genome context
(Eburgeri_3)

FYBX02010353.1: 2513163-2513223 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-8-P3o1)

Mir-8-P3o1 FYBX02010353.1: 2513163-2513223 [-] UCSC Ensembl
Mir-8-P2o1 FYBX02010353.1: 2516084-2516143 [-] UCSC Ensembl
Mir-8-P1o1 FYBX02010353.1: 2518841-2518898 [-] UCSC Ensembl

Seed

AAUACUG

Precursor
(pre-Mir +30nt flank)

UCUUUCCCCUCACGGAUGCGUGCAGUCGUUGCCUUUACCAGACAAGCUUAGAUGUCACAGUGAAAUCUCUAAUACUGUCUGGUAAUGUCGUCGAAGGCAAGCGGAUGGCAUCUUCUAUACA

Get precursor sequence

Structure

        10          20        30        40        50          
UCUUUCCCCUCACGGAU--| G   AG   U  CCU          AGC     UGUCACA 
                   GC UGC  UCG UG   UUACCAGACA   UUAGA       \
                   CG ACG  AGC GC   AAUGGUCUGU   AAUCU       G
ACAUAUCUUCUACGGUAGG^ A   GA   U  UGU          CAU     CUAAAGU 
 .       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17), UGUG in loop

Tissue expression

To

Star sequence

Ebu-Mir-8-P3o1_5p*

mirBase accession

None

Sequence

0- GCCUUUACCAGACAAGCUUAGA -22

Get sequence

Mature sequence

Ebu-Mir-8-P3o1_3p

mirBase accession

None

Sequence

39- UAAUACUGUCUGGUAAUGUCGU -61

Get sequence