MirGeneDB 2.1

MirGeneDB ID

Bfl-Mir-4887

Family name MIR-4887 (all species)
Seed UCUCGAU
Species Florida lancelet (Branchiostoma floridae)
MiRBase ID bfl-mir-4887
Paralogues
Orthologues Bla-Mir-4887 
Node of Origin (locus) Branchiostoma
Node of Origin (family) Branchiostoma
Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic)
NW_023365726.1: 63878-63934 [+] UCSC
Precursor
(pre-Mir +30nt flank)
UGACAUCUUGUAUCACUCGUUGAUGAAGUUUUCUCGAUUGUUCUGGUCCAUCUCUAUUUUUGUGAUGGACCAAUACAACCGCGAACCCGUCAUCAUCGCCUUCCAACUGGACUUGAU
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Structure
        10          20        30        40        50        
UGACAUCUUGUAUCACU--| U      AGUU   U  A    UC         UCUAU 
                   CG UGAUGA    UUC CG UUGU  UGGUCCAUC     \
                   GC ACUACU    AAG GC AACA  ACCAGGUAG     U
UAGUUCAGGUCAACCUUCC^ U      GCCC   C  C    UA         UGUUU 
     110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Bfl-Mir-4887_5p

mirBase accessionMIMAT0020474
Sequence
0- UUCUCGAUUGUUCUGGUCCAUC -22
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Star sequence

Bfl-Mir-4887_3p* (predicted)

mirBase accessionNone
Sequence
34- AUGGACCAAUACAACCGCGAACC -57
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