| MirGeneDB ID | Bfl-Mir-4887 |
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| Family name |
MIR-4887 (all species) |
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| Species |
Florida lancelet (Branchiostoma floridae) |
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| MiRBase ID |
bfl-mir-4887
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| Paralogues |
|
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| Orthologues |
Bla-Mir-4887
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| Node of Origin (locus) |
Branchiostoma
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| Node of Origin (family) |
Branchiostoma
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Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic) |
NW_023365726.1: 63878-63934 [+]
UCSC
|
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| Seed |
UCUCGAU |
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Precursor
(pre-Mir +30nt flank) |
UGACAUCUUGUAUCACUCGUUGAUGAAGUUUUCUCGAUUGUUCUGGUCCAUCUCUAUUUUUGUGAUGGACCAAUACAACCGCGAACCCGUCAUCAUCGCCUUCCAACUGGACUUGAU
Get precursor sequence
|
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| Structure | 10 20 30 40 50
UGACAUCUUGUAUCACU--| U AGUU U A UC UCUAU
CG UGAUGA UUC CG UUGU UGGUCCAUC \
GC ACUACU AAG GC AACA ACCAGGUAG U
UAGUUCAGGUCAACCUUCC^ U GCCC C C UA UGUUU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
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| Mature sequence |
Bfl-Mir-4887_5p |
| mirBase accession | MIMAT0020474 |
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| Sequence |
0- UUCUCGAUUGUUCUGGUCCAUC -22
Get sequence
|
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| Star sequence |
Bfl-Mir-4887_3p* (predicted) |
| mirBase accession | None |
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| Sequence |
34- AUGGACCAAUACAACCGCGAACC -57
Get sequence
|
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