| MirGeneDB ID | Bfl-Mir-4876-P1 |
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| Family name |
MIR-4876 (all species) |
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| Species |
Florida lancelet (Branchiostoma floridae) |
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| MiRBase ID |
bfl-mir-4876
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| Paralogues |
Bfl-Mir-4876-P2
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| Orthologues |
Bla-Mir-4876
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| Node of Origin (locus) |
B. floridae
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| Node of Origin (family) |
Branchiostoma
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Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic) |
NC_049984.1: 7355971-7356031 [+]
UCSC
|
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| Seed |
UUACGUG |
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Precursor
(pre-Mir +30nt flank) |
GAGAGUGAAGAUGGCAUGCUCGCGGCCACAGGUCUCACCUGGUGCGUAACGCUGGUAUCAGAUCUCGCCUUACGUGCCACGUGAGGACUCUUGGACGCGCAGCUCUAUCCACAGCCGUACC
Get precursor sequence
|
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| Structure | 10 20 30 40 50
GAGAGUGAAGAUGGCAU- - G CA -| C UG C UGGUAU
GCU CGCG CCA GGU CUCAC UGG CGUAA GC C
CGA GCGC GGU UCA GAGUG ACC GCAUU CG A
CCAUGCCGACACCUAUCU C A UC G^ C GU C CUCUAG
. 110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
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| Star sequence |
Bfl-Mir-4876-P1_5p* (predicted) |
| mirBase accession | None |
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| Sequence |
0- GGUCUCACCUGGUGCGUAACGC -22
Get sequence
|
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| Mature sequence |
Bfl-Mir-4876-P1_3p |
| mirBase accession | MIMAT0020459 |
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| Sequence |
38- CUUACGUGCCACGUGAGGACUCU -61
Get sequence
|
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