| MirGeneDB ID | Bla-Mir-4876 |
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| Family name |
MIR-4876 (all species) |
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| Species |
European lancelet (Branchiostoma lanceolatum) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Bfl-Mir-4876-P1
Bfl-Mir-4876-P2
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| Node of Origin (locus) |
Branchiostoma
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| Node of Origin (family) |
Branchiostoma
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Genome context
(BraLan2) |
Sc0000005: 2219876-2219936 [+]
Ensembl
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| Seed |
UUACGUG |
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Precursor
(pre-Mir +30nt flank) |
AGGAAGACUGCAGACAUGCUCGCGGCCACAGGUCUCACCUGGUGCGUAACGCUGGUGUUAUGUCUCGCCUUACGUGCCACGUGAGGACUCUUGGACGUGAAGCUCUGUAUCCACGGCCAAA
Get precursor sequence
|
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| Structure | 10 20 30 40 50
AGGAAGACUGCAGACAU- - G CA -| C UG C UGGUGU
GC UCGCG CCA GGU CUCAC UGG CGUAA GC U
CG AGUGC GGU UCA GAGUG ACC GCAUU CG A
AAACCGGCACCUAUGUCU A A UC G^ C GU C CUCUGU
. 110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | UG at 5p(-14) |
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Tissue expression
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| Star sequence |
Bla-Mir-4876_5p* |
| mirBase accession | None |
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| Sequence |
0- GGUCUCACCUGGUGCGUAACGC -22
Get sequence
|
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| Mature sequence |
Bla-Mir-4876_3p |
| mirBase accession | None |
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| Sequence |
38- CUUACGUGCCACGUGAGGACUCU -61
Get sequence
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