| MirGeneDB ID | Bfl-Mir-2070 |
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| Family name |
MIR-2070 (all species) |
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| Species |
Florida lancelet (Branchiostoma floridae) |
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| MiRBase ID |
bfl-mir-2070
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| Paralogues |
|
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| Orthologues |
Bla-Mir-2070-P1
Bla-Mir-2070-P2
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| Node of Origin (locus) |
Branchiostoma
|
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| Node of Origin (family) |
Branchiostoma
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Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic) |
NC_049987.1: 24240350-24240409 [-]
UCSC
|
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| Seed |
UUCCACA |
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Precursor
(pre-Mir +30nt flank) |
UCUCUCAGCGACAGUCGGGUGUGACGGGUGUUUCCACAGCCUCUACACAUGUGGGCAUACUACAGCGCAUGUGCAUUAGCUGUGGGAUCACUCUGUACACCGUUAUACAACAGGAGACAC
Get precursor sequence
|
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| Structure | 10 20 30 40 50
UCUCUCAGCGACAGUCG--| AC U CUCUA GGGCAU
GGUGUG GGGUG UUCCACAGC CACAUGU A
CCACAU CUCAC AGGGUGUCG GUGUACG C
CACAGAGGACAACAUAUUG^ GU U AUUAC CGACAU
. 110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Bfl-Mir-2070_5p |
| mirBase accession | MIMAT0009998 |
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| Sequence |
0- UUUCCACAGCCUCUACACAUGU -22
Get sequence
|
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| Star sequence |
Bfl-Mir-2070_3p* |
| mirBase accession | MIMAT0019171 |
|---|
| Sequence |
38- AUGUGCAUUAGCUGUGGGAUCA -60
Get sequence
|
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